Information for CAZyme ID: BDR59839.1
Basic Information
GenBank ID | BDR59839.1 |
Family | GH32 |
Sequence Length | 474 |
UniProt ID | BDR59839.1(MOD)![]() |
Average pLDDT? | 95.14 |
CAZy50 ID | 74705 |
CAZy50 Rep | Yes, BDR59839.1 |
Structure Cluster | SC_GH32_clus114 |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 2976676 |
Kingdom | Bacteria |
Phylum | Bacillota |
Class | Bacilli |
Order | Lactobacillales |
Family | Lactobacillaceae |
Genus | Lactobacillus |
Species | Lactobacillus xylocopicola |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MEKKATNNHQ IYYQPKNVWV GDIMPYANDG KFYIYHQRDQ RVHGPITDPF GWALATTKDF | 60 |
VNYQDYGESL KRGSDQDWDQ FVYAGSVFEA NGTIHAFYTG YNKEFLQAGK TSQILLHATS | 120 |
NDFIHWKKSI NALKLTPQPG YDIRNWRDPS VIWDERKQEY LLILGARKGK DKHKLTGRLV | 180 |
KYTSKDLENW QFEGDFWAPN LYTMFEMPQL FQMGDWWYLV YSEYSVKNKV FYRMSKSLDG | 240 |
PWLKPKDEAF DGRAYYAART AFDGKRRVLF GWVPTKLNED DMSNYEWGGT FVPQEVYQRR | 300 |
DKTLGVRPIA EICEAFTSKQ KIPAQKIGAV DTLQEKTLVE NTGYHFYFHT TISFSESTTD | 360 |
FSIRLYKNNA TDESYEFRFN LDENQLTLDK NPCYRWYQMM DKGLNRPINL EANQDYDLKV | 420 |
IVDDNILSLY LDGVALNTRV YHKFGTSLAL TATNGNLSLS NIEFSNKYQN AKKG | 474 |
Predicted 3D structure by AlphaFold2 with pLDDT = 95.14 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
MEKKATNNHQ IYYQPKNVWV GDIMPYANDG KFYIYHQRDQ RVHGPITDPF GWALATTKDF | 60 |
VNYQDYGESL KRGSDQDWDQ FVYAGSVFEA NGTIHAFYTG YNKEFLQAGK TSQILLHATS | 120 |
NDFIHWKKSI NALKLTPQPG YDIRNWRDPS VIWDERKQEY LLILGARKGK DKHKLTGRLV | 180 |
KYTSKDLENW QFEGDFWAPN LYTMFEMPQL FQMGDWWYLV YSEYSVKNKV FYRMSKSLDG | 240 |
PWLKPKDEAF DGRAYYAART AFDGKRRVLF GWVPTKLNED DMSNYEWGGT FVPQEVYQRR | 300 |
DKTLGVRPIA EICEAFTSKQ KIPAQKIGAV DTLQEKTLVE NTGYHFYFHT TISFSESTTD | 360 |
FSIRLYKNNA TDESYEFRFN LDENQLTLDK NPCYRWYQMM DKGLNRPINL EANQDYDLKV | 420 |
IVDDNILSLY LDGVALNTRV YHKFGTSLAL TATNGNLSLS NIEFSNKYQN AKKG | 474 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.