Information for CAZyme ID: BDI29301.1
Basic Information
| GenBank ID | BDI29301.1 |
| Family | GH42 |
| Sequence Length | 675 |
| UniProt ID | A0A402D4K3(100,100) |
| Average pLDDT? | 91.81 |
| CAZy50 ID | 41763 |
| CAZy50 Rep | Yes, BDI29301.1 |
| Structure Cluster | SC_GH42_clus31 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 2219043 |
| Kingdom | Bacteria |
| Phylum | Armatimonadota |
| Class | Armatimonadia |
| Order | Capsulimonadales |
| Family | Capsulimonadaceae |
| Genus | Capsulimonas |
| Species | Capsulimonas corticalis |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MKNWTHGFLL GSSYYPEQWD ASMWEAEFVK MRELGHNAVR MGEFAWAFFE PSAGVFEFDW | 60 |
| MERAIELAAR YGVQTILCTP TASVPPWLFQ DHPEVLGGNE KGAFRYGARK GYCTNSPRML | 120 |
| EAADRIVDAM GQRFGDNPHI VGWQLDNEPG FPFVCYDPRC LSAFRIWLRE RYQTLGSLND | 180 |
| AWGAAFWSHR YTDWDQIDFP FNVGDGAWNP GQKLDYRRFF SDSFIRYLGR QGERLRPYIG | 240 |
| DRFVCTNWPD TSWSVDLYQA AGILDVTAWD NYSRPPGLVE WQDQLHGGMH HDIARCAGPN | 300 |
| GRFLVAEQSA QTPAHADSKG IHLQTWTDVA HGALGAIFFE WRPPLGGAEQ GYISVLQLDG | 360 |
| SFGPAYDQHK RLGAELARLG GELADAVTDA DIAMLFDYEN QWAQGFRVGP DGYDAEFVRW | 420 |
| YKGLKSLGRS IDIVKPGSDL SRYRLVAAPG LRIVSEETAS LLKQYVQDGG TLLLNVQSGA | 480 |
| YDPTGKLRPL MPPGIFADIA GLVTPASVAK RSMTGNLLQG PTDQGIGVKF GVRFADGASF | 540 |
| SPETVMEGVE LRGAESIAFF TGARMEGRPA ITVNRVGSGS VFYVATDSRD GGFYDALARE | 600 |
| CGGRLGIEPL CAAPPGVEAV SRRTSDWRYL FLLNHTDHRQ EVSLPSPAVE LLSERRVEGA | 660 |
| LVMESFDVAV LKWKA | 675 |
Predicted 3D structure by AlphaFold2 with pLDDT = 91.81 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MKNWTHGFLL GSSYYPEQWD ASMWEAEFVK MRELGHNAVR MGEFAWAFFE PSAGVFEFDW | 60 |
| MERAIELAAR YGVQTILCTP TASVPPWLFQ DHPEVLGGNE KGAFRYGARK GYCTNSPRML | 120 |
| EAADRIVDAM GQRFGDNPHI VGWQLDNEPG FPFVCYDPRC LSAFRIWLRE RYQTLGSLND | 180 |
| AWGAAFWSHR YTDWDQIDFP FNVGDGAWNP GQKLDYRRFF SDSFIRYLGR QGERLRPYIG | 240 |
| DRFVCTNWPD TSWSVDLYQA AGILDVTAWD NYSRPPGLVE WQDQLHGGMH HDIARCAGPN | 300 |
| GRFLVAEQSA QTPAHADSKG IHLQTWTDVA HGALGAIFFE WRPPLGGAEQ GYISVLQLDG | 360 |
| SFGPAYDQHK RLGAELARLG GELADAVTDA DIAMLFDYEN QWAQGFRVGP DGYDAEFVRW | 420 |
| YKGLKSLGRS IDIVKPGSDL SRYRLVAAPG LRIVSEETAS LLKQYVQDGG TLLLNVQSGA | 480 |
| YDPTGKLRPL MPPGIFADIA GLVTPASVAK RSMTGNLLQG PTDQGIGVKF GVRFADGASF | 540 |
| SPETVMEGVE LRGAESIAFF TGARMEGRPA ITVNRVGSGS VFYVATDSRD GGFYDALARE | 600 |
| CGGRLGIEPL CAAPPGVEAV SRRTSDWRYL FLLNHTDHRQ EVSLPSPAVE LLSERRVEGA | 660 |
| LVMESFDVAV LKWKA | 675 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.