Information for CAZyme ID: BDI28678.1
Basic Information
GenBank ID | BDI28678.1 |
Family | GH51 |
Sequence Length | 822 |
UniProt ID | A0A402D1R9(100,100)![]() |
Average pLDDT? | 92.32 |
CAZy50 ID | 25314 |
CAZy50 Rep | Yes, BDI28678.1 |
Structure Cluster | SC_GH51_clus45 |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 2219043 |
Kingdom | Bacteria |
Phylum | Armatimonadota |
Class | Armatimonadia |
Order | Capsulimonadales |
Family | Capsulimonadaceae |
Genus | Capsulimonas |
Species | Capsulimonas corticalis |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MRHHCWKFGA LAAITTAVLA APAGAASGRL TVKADQPGAR ISPMLYGLMT EEINHSYDGG | 60 |
LYGELIQNRV FKDDAANPVH WSVDLNGGAA GSIALDANQP IPDTALTTCL RLDVSTAGTG | 120 |
RGVGAANDGY WGIPVKPSTS YRASFYAKAD DNFKGPLTLT IESTDGTRVA AQAAAPAPGA | 180 |
TWKKYTVTLK TDAAVTEGSQ YRFIVSAKGT GAVWLNQISL FPPTFNNRPN GNRIDLMDLQ | 240 |
AGMSPTFLRL PGGNYLEGGS IDERFDWKKT LGPIEQRPGH QGPWSYRSTD GLGLLEFLEW | 300 |
CEDLKIEPLL AVYAGYSLDG QHIEPGPALA PFVQDALDEI EYLTGDKNTT WGARRIADGH | 360 |
PKPFPLHYVE IGNEDEFDKS ASYDGRYAQF QDAIKAKYPK LQLIATSTVT QRKPDLIDDH | 420 |
FYRTAAEMER DSGHYDNYDR SGPKIFVGEW ASQDVSTPWV DADKKGPTPS LSAALGDAAW | 480 |
MIGMERNSDI VLMSCYAPMF VNVNKGARQW AVNLIGYDAN ASFGSPSYYA QAMFGANKGD | 540 |
VVLPAAVTLA DAPVQPAPKG KVGVGTWATQ AEFKDIQVTQ GAASILPAGD VHWALGPGEW | 600 |
KQDGGVLQQS SNANGTDALL GDAAWTDYTY HVKARKIGGK EGFLIKFHAQ DSDNYVQWNI | 660 |
GGWSNTRSTL QRASDGAVEE FGGSKPLTVE TGRWYDIRIE VQGMKIRCYL DDQLITEATD | 720 |
TPSVVSPLYT TASRDLKSGD VILKVVNTAA DAQTLDVDIQ GVKNVAKDAQ EHVLTGRLRD | 780 |
INTIDAPKNA AVTDSTLHGA GPTFTHEFPA YSVTVLRLKT KK | 822 |
Predicted 3D structure by AlphaFold2 with pLDDT = 92.32 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
MRHHCWKFGA LAAITTAVLA APAGAASGRL TVKADQPGAR ISPMLYGLMT EEINHSYDGG | 60 |
LYGELIQNRV FKDDAANPVH WSVDLNGGAA GSIALDANQP IPDTALTTCL RLDVSTAGTG | 120 |
RGVGAANDGY WGIPVKPSTS YRASFYAKAD DNFKGPLTLT IESTDGTRVA AQAAAPAPGA | 180 |
TWKKYTVTLK TDAAVTEGSQ YRFIVSAKGT GAVWLNQISL FPPTFNNRPN GNRIDLMDLQ | 240 |
AGMSPTFLRL PGGNYLEGGS IDERFDWKKT LGPIEQRPGH QGPWSYRSTD GLGLLEFLEW | 300 |
CEDLKIEPLL AVYAGYSLDG QHIEPGPALA PFVQDALDEI EYLTGDKNTT WGARRIADGH | 360 |
PKPFPLHYVE IGNEDEFDKS ASYDGRYAQF QDAIKAKYPK LQLIATSTVT QRKPDLIDDH | 420 |
FYRTAAEMER DSGHYDNYDR SGPKIFVGEW ASQDVSTPWV DADKKGPTPS LSAALGDAAW | 480 |
MIGMERNSDI VLMSCYAPMF VNVNKGARQW AVNLIGYDAN ASFGSPSYYA QAMFGANKGD | 540 |
VVLPAAVTLA DAPVQPAPKG KVGVGTWATQ AEFKDIQVTQ GAASILPAGD VHWALGPGEW | 600 |
KQDGGVLQQS SNANGTDALL GDAAWTDYTY HVKARKIGGK EGFLIKFHAQ DSDNYVQWNI | 660 |
GGWSNTRSTL QRASDGAVEE FGGSKPLTVE TGRWYDIRIE VQGMKIRCYL DDQLITEATD | 720 |
TPSVVSPLYT TASRDLKSGD VILKVVNTAA DAQTLDVDIQ GVKNVAKDAQ EHVLTGRLRD | 780 |
INTIDAPKNA AVTDSTLHGA GPTFTHEFPA YSVTVLRLKT KK | 822 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.