CAZyme3D

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Entry ID

Information for CAZyme ID: BDI28678.1

Basic Information

GenBank IDBDI28678.1
FamilyGH51
Sequence Length822
UniProt IDA0A402D1R9(100,100)Download
Average pLDDT?92.32
CAZy50 ID25314
CAZy50 RepYes, BDI28678.1
Structure ClusterSC_GH51_clus45
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2219043
KingdomBacteria
PhylumArmatimonadota
ClassArmatimonadia
OrderCapsulimonadales
FamilyCapsulimonadaceae
GenusCapsulimonas
SpeciesCapsulimonas corticalis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRHHCWKFGA  LAAITTAVLA  APAGAASGRL  TVKADQPGAR  ISPMLYGLMT  EEINHSYDGG60
LYGELIQNRV  FKDDAANPVH  WSVDLNGGAA  GSIALDANQP  IPDTALTTCL  RLDVSTAGTG120
RGVGAANDGY  WGIPVKPSTS  YRASFYAKAD  DNFKGPLTLT  IESTDGTRVA  AQAAAPAPGA180
TWKKYTVTLK  TDAAVTEGSQ  YRFIVSAKGT  GAVWLNQISL  FPPTFNNRPN  GNRIDLMDLQ240
AGMSPTFLRL  PGGNYLEGGS  IDERFDWKKT  LGPIEQRPGH  QGPWSYRSTD  GLGLLEFLEW300
CEDLKIEPLL  AVYAGYSLDG  QHIEPGPALA  PFVQDALDEI  EYLTGDKNTT  WGARRIADGH360
PKPFPLHYVE  IGNEDEFDKS  ASYDGRYAQF  QDAIKAKYPK  LQLIATSTVT  QRKPDLIDDH420
FYRTAAEMER  DSGHYDNYDR  SGPKIFVGEW  ASQDVSTPWV  DADKKGPTPS  LSAALGDAAW480
MIGMERNSDI  VLMSCYAPMF  VNVNKGARQW  AVNLIGYDAN  ASFGSPSYYA  QAMFGANKGD540
VVLPAAVTLA  DAPVQPAPKG  KVGVGTWATQ  AEFKDIQVTQ  GAASILPAGD  VHWALGPGEW600
KQDGGVLQQS  SNANGTDALL  GDAAWTDYTY  HVKARKIGGK  EGFLIKFHAQ  DSDNYVQWNI660
GGWSNTRSTL  QRASDGAVEE  FGGSKPLTVE  TGRWYDIRIE  VQGMKIRCYL  DDQLITEATD720
TPSVVSPLYT  TASRDLKSGD  VILKVVNTAA  DAQTLDVDIQ  GVKNVAKDAQ  EHVLTGRLRD780
INTIDAPKNA  AVTDSTLHGA  GPTFTHEFPA  YSVTVLRLKT  KK822

Predicted 3D structure by AlphaFold2 with pLDDT = 92.32 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MRHHCWKFGA  LAAITTAVLA  APAGAASGRL  TVKADQPGAR  ISPMLYGLMT  EEINHSYDGG60
LYGELIQNRV  FKDDAANPVH  WSVDLNGGAA  GSIALDANQP  IPDTALTTCL  RLDVSTAGTG120
RGVGAANDGY  WGIPVKPSTS  YRASFYAKAD  DNFKGPLTLT  IESTDGTRVA  AQAAAPAPGA180
TWKKYTVTLK  TDAAVTEGSQ  YRFIVSAKGT  GAVWLNQISL  FPPTFNNRPN  GNRIDLMDLQ240
AGMSPTFLRL  PGGNYLEGGS  IDERFDWKKT  LGPIEQRPGH  QGPWSYRSTD  GLGLLEFLEW300
CEDLKIEPLL  AVYAGYSLDG  QHIEPGPALA  PFVQDALDEI  EYLTGDKNTT  WGARRIADGH360
PKPFPLHYVE  IGNEDEFDKS  ASYDGRYAQF  QDAIKAKYPK  LQLIATSTVT  QRKPDLIDDH420
FYRTAAEMER  DSGHYDNYDR  SGPKIFVGEW  ASQDVSTPWV  DADKKGPTPS  LSAALGDAAW480
MIGMERNSDI  VLMSCYAPMF  VNVNKGARQW  AVNLIGYDAN  ASFGSPSYYA  QAMFGANKGD540
VVLPAAVTLA  DAPVQPAPKG  KVGVGTWATQ  AEFKDIQVTQ  GAASILPAGD  VHWALGPGEW600
KQDGGVLQQS  SNANGTDALL  GDAAWTDYTY  HVKARKIGGK  EGFLIKFHAQ  DSDNYVQWNI660
GGWSNTRSTL  QRASDGAVEE  FGGSKPLTVE  TGRWYDIRIE  VQGMKIRCYL  DDQLITEATD720
TPSVVSPLYT  TASRDLKSGD  VILKVVNTAA  DAQTLDVDIQ  GVKNVAKDAQ  EHVLTGRLRD780
INTIDAPKNA  AVTDSTLHGA  GPTFTHEFPA  YSVTVLRLKT  KK822

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM16(132-198)+GH51(187-820)

MRHHCWKFGA  LAAITTAVLA  APAGAASGRL  TVKADQPGAR  ISPMLYGLMT  EEINHSYDGG60
LYGELIQNRV  FKDDAANPVH  WSVDLNGGAA  GSIALDANQP  IPDTALTTCL  RLDVSTAGTG120
RGVGAANDGY  WGIPVKPSTS  YRASFYAKAD  DNFKGPLTLT  IESTDGTRVA  AQAAAPAPGA180
TWKKYTVTLK  TDAAVTEGSQ  YRFIVSAKGT  GAVWLNQISL  FPPTFNNRPN  GNRIDLMDLQ240
AGMSPTFLRL  PGGNYLEGGS  IDERFDWKKT  LGPIEQRPGH  QGPWSYRSTD  GLGLLEFLEW300
CEDLKIEPLL  AVYAGYSLDG  QHIEPGPALA  PFVQDALDEI  EYLTGDKNTT  WGARRIADGH360
PKPFPLHYVE  IGNEDEFDKS  ASYDGRYAQF  QDAIKAKYPK  LQLIATSTVT  QRKPDLIDDH420
FYRTAAEMER  DSGHYDNYDR  SGPKIFVGEW  ASQDVSTPWV  DADKKGPTPS  LSAALGDAAW480
MIGMERNSDI  VLMSCYAPMF  VNVNKGARQW  AVNLIGYDAN  ASFGSPSYYA  QAMFGANKGD540
VVLPAAVTLA  DAPVQPAPKG  KVGVGTWATQ  AEFKDIQVTQ  GAASILPAGD  VHWALGPGEW600
KQDGGVLQQS  SNANGTDALL  GDAAWTDYTY  HVKARKIGGK  EGFLIKFHAQ  DSDNYVQWNI660
GGWSNTRSTL  QRASDGAVEE  FGGSKPLTVE  TGRWYDIRIE  VQGMKIRCYL  DDQLITEATD720
TPSVVSPLYT  TASRDLKSGD  VILKVVNTAA  DAQTLDVDIQ  GVKNVAKDAQ  EHVLTGRLRD780
INTIDAPKNA  AVTDSTLHGA  GPTFTHEFPA  YSVTVLRLKT  KK822

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help