CAZyme3D

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Entry ID

Information for CAZyme ID: BDF44114.1

Basic Information

GenBank IDBDF44114.1
FamilyGH32
Sequence Length482
UniProt IDA0A416HQU2(98.1,100)Download
Average pLDDT?94.25
CAZy50 ID72826
CAZy50 RepYes, BDF44114.1
Structure ClusterSC_GH32_clus114
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1898203
KingdomBacteria
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
Genus
SpeciesLachnospiraceae bacterium

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKGNYNIFYT  PEKQYPGMPH  GEMCGDFMPF  YWQGTYYLFY  LYKYCVYAVE  TTDFVSFGQP60
FLVLRNGSPD  DQDWHIGTGS  VFAHDGLFLF  HYTGFCEGNQ  DADGKNEQVV  MRATSRDLKH120
WEKDTDFYFR  PDTRYYGNLH  WRDPHVIWNE  ELGKFCMLIT  ATQKEGACLR  TGCTAVYVSA180
DVRNWEHYKT  LYAPRTFITH  ECHDCFRMGD  KWYLTFSNYS  RWWETRYRVA  DSFDGPWEVP240
EQDDMFDGRE  FYAAKSVTDG  NKRYMVGWES  IREDCRDSGR  HLWGGNLLVH  ELVPRKDGRL300
GVRLPETIRQ  SFGKVLPIET  VPMQGSFRED  TEGITGDVPD  GFGWAALGSL  EETCLFRTTI360
SWKEGTEAVG  LMIHADAALE  KWCQLRLEVR  HGKILMDRYN  RVDGDQSYQD  ERPVTFHENK420
AEITLVVSGN  IMLVYVDDVA  LTSRCYEIGT  GTVGIFAEYG  SVRCTQTQLL  EQETAEKPMG480
KN482

Predicted 3D structure by AlphaFold2 with pLDDT = 94.25 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKGNYNIFYT  PEKQYPGMPH  GEMCGDFMPF  YWQGTYYLFY  LYKYCVYAVE  TTDFVSFGQP60
FLVLRNGSPD  DQDWHIGTGS  VFAHDGLFLF  HYTGFCEGNQ  DADGKNEQVV  MRATSRDLKH120
WEKDTDFYFR  PDTRYYGNLH  WRDPHVIWNE  ELGKFCMLIT  ATQKEGACLR  TGCTAVYVSA180
DVRNWEHYKT  LYAPRTFITH  ECHDCFRMGD  KWYLTFSNYS  RWWETRYRVA  DSFDGPWEVP240
EQDDMFDGRE  FYAAKSVTDG  NKRYMVGWES  IREDCRDSGR  HLWGGNLLVH  ELVPRKDGRL300
GVRLPETIRQ  SFGKVLPIET  VPMQGSFRED  TEGITGDVPD  GFGWAALGSL  EETCLFRTTI360
SWKEGTEAVG  LMIHADAALE  KWCQLRLEVR  HGKILMDRYN  RVDGDQSYQD  ERPVTFHENK420
AEITLVVSGN  IMLVYVDDVA  LTSRCYEIGT  GTVGIFAEYG  SVRCTQTQLL  EQETAEKPMG480
KN482

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH32(29-289)

MKGNYNIFYT  PEKQYPGMPH  GEMCGDFMPF  YWQGTYYLFY  LYKYCVYAVE  TTDFVSFGQP60
FLVLRNGSPD  DQDWHIGTGS  IFAHDGLFLF  HYTGFCEGNQ  DVDGKNEQVV  MRATSRDLKH120
WEKDTDFYFR  PDTRYYGNLH  WRDPHVIWNE  ELGKFCMLIT  ATQKEGACLR  TGCTAVYVSE180
DVRNWEHYKT  LYAPRTFITH  ECHDCFRMGD  KWYLTFSNYS  RWWETRYRVA  DSFDGPWEVP240
EQDDMFDGRE  FYAAKSVTDG  NKRYMVGWES  IREDCRDSGR  HLWGGNLLVH  ELVPRKDGRL300
GVRLPETIRK  SFGKALPIET  VPMQGSFRED  PEGITGDVPD  GFGWAALGSL  EETCLFRTTI360
SWKEGTEAVG  LMIHADAALE  KWCQLRLEVR  HGKILMDRYN  RVDGDQSYQD  ERPVTFHKNK420
AEITLVVSGN  IMLVYVDDVA  LTSRCYEIGT  GTVGVFAEYG  SVRCTQTQLL  EQETAENPMG480
KN482

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help