CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: BDF43037.1

Basic Information

GenBank IDBDF43037.1
FamilyGH32
Sequence Length467
UniProt IDA0A416HUI1(99.8,100)Download
Average pLDDT?95.20
CAZy50 ID76196
CAZy50 RepYes, BDF43037.1
Structure ClusterSC_GH32_clus114
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1898203
KingdomBacteria
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
Genus
SpeciesLachnospiraceae bacterium

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MQTKNTYRPA  VHFTPPANWM  NDPNGMVYIN  GEYHLFYQYY  PSAPHWGPMH  WGHGATRDLL60
HWEHLPTALY  PDELGCIFSG  SCVLDKDNVS  GFGSTDKPPL  IAVYTSHHTE  THQEQQSIAY120
SLDYIHFEKY  YGNPVITGEG  KTDFRDPKVF  WNPVKKCYSL  VLAAGENVEF  YSSPNLKDWE180
KTGEFQAGIH  GLGGICECPD  CFPLKTEEGE  KWVLIISMIL  PPEEIGKHNN  AYDRMSHITQ240
YYIGTFDGNT  FTDTEESGFP  LLPDFGTDNY  AAVTFQNLEE  KVMIGWADNW  DYAAKAPTQN300
DGFRGKMTLA  REMKLVKTDR  GYRIAFSFAG  TKALEAGAFP  LTEGDNRLHT  DSFGLKAAVN360
GTGSITLAND  AGESVEIAVT  EDEIIVDRRR  AGQTSFQEDY  GKESYGLNRA  PRLLHHTSQM420
ELIFDRCVLE  VLADDGMTPF  TISLFPTQPY  DNISVAGDIR  AMLYHLR467

Predicted 3D structure by AlphaFold2 with pLDDT = 95.20 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MQTKNTYRPA  VHFTPPANWM  NDPNGMVYIN  GEYHLFYQYY  PSAPHWGPMH  WGHGATRDLL60
HWEHLPTALY  PDELGCIFSG  SCVLDKDNVS  GFGSTDKPPL  IAVYTSHHTE  THQEQQSIAY120
SLDYIHFEKY  YGNPVITGEG  KTDFRDPKVF  WNPVKKCYSL  VLAAGENVEF  YSSPNLKDWE180
KTGEFQAGIH  GLGGICECPD  CFPLKTEEGE  KWVLIISMIL  PPEEIGKHNN  AYDRMSHITQ240
YYIGTFDGNT  FTDTEESGFP  LLPDFGTDNY  AAVTFQNLEE  KVMIGWADNW  DYAAKAPTQN300
DGFRGKMTLA  REMKLVKTDR  GYRIAFSFAG  TKALEAGAFP  LTEGDNRLHT  DSFGLKAAVN360
GTGSITLAND  AGESVEIAVT  EDEIIVDRRR  AGQTSFQEDY  GKESYGLNRA  PRLLHHTSQM420
ELIFDRCVLE  VLADDGMTPF  TISLFPTQPY  DNISVAGDIR  AMLYHLR467

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH32(12-319)

MQTKNTYRPA  VHFTPPANWM  NDPNGMVYIN  GEYHLFYQYY  PSAPHWGPMH  WGHAATRDLL60
HWEHLPTALY  PDELGCIFSG  SCVLDKDNVS  GFGSTDKPPL  IAVYTSHHTE  THQEQQSIAY120
SLDYIHFEKY  YGNPVITGEG  KTDFRDPKVF  WNPVKKCYSL  VLAAGENVEF  YSSPNLKDWE180
KTGEFQAGIH  GLGGICECPD  CFPLKTEEGE  KWVLIISMIL  PPEEIGKHNN  AYDRMSHITQ240
YYIGTFDGNT  FTDTEESGFP  LLPDFGTDNY  AAVTFQNLEE  KVMIGWADNW  DYAAKAPTQN300
DGFRGKMTLA  REMKLVKTDR  GYRIAFSFAG  TKALEAGAFP  LTEGDNRLHT  DSFGLKAAVN360
GTGSITLAND  AGESVEIAVT  EDEIIVDRRR  AGQTSFQEDY  GKESYGLNRA  PRLLHHTSQM420
ELIFDRCVLE  VLADDGMTPF  TISLFPTQPY  DNISVAGDIR  AMLYHLR467

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help