CAZyme3D

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Entry ID

Information for CAZyme ID: BDA48086.1

Basic Information

GenBank IDBDA48086.1
FamilyGH32
Sequence Length567
UniProt IDA0A8J9WRA1(100,100)Download
Average pLDDT?86.88
CAZy50 ID57047
CAZy50 RepYes, BDA48086.1
Structure ClusterSC_GH32_clus36
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2315456
KingdomEukaryota
PhylumChlorophyta
ClassTrebouxiophyceae
Order
Family
GenusCoccomyxa
SpeciesCoccomyxa sp. Obi

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTADKIERTK  LGNSWLLDPD  KPWYHVMPRS  GWLNDPNGPI  YYKGKYHIFY  QHVVGTSQWD60
WACSWGHASS  ADLVHWKHEP  IALQPTPGTY  DAEGCWSGCS  TLDSNDTPVI  LYTAVRLREK120
PGLPLPPSAS  DLGLQMIESQ  CAAVCRPDDD  DLVTWTKQSR  PLIELPPPNE  GLVGFRDPYI180
IQRGVDGRPW  QLIIGSGVKG  KGGTLLLYTS  DNLLSGWKYR  GSFIKGKSRP  CDEWDLGEMW240
ECPFFVCLPQ  TSAEEQSSKE  TANGNAREAA  DSTAHVLCVS  PYPHYRKDRP  TNPCLCWVGQ300
LSNDTFNVED  ASGPHRLDLG  DILYAPNAFV  DGRGRTLMLA  WLQELRTGGA  YDYAGCLSLP360
RLLSLQGGRL  HQQPAPELAQ  LRLGEGVHLA  NLLVEEGAAA  ALPQIWGPSV  DVSFRLARGS420
CSAAGILLRA  WLRADADSEQ  PTAAAAVVDW  DAGTLEVIFS  TQWDRNALSF  GWDSVSKRVG480
GPIQIHEHAV  QLRVMVDHSA  VEIFTGSGET  LTTRVYRGDM  AAGDDPGMFF  IAKDGAASVT540
DIAAYTMGSI  WEQASDQPAK  THEPAME567

Predicted 3D structure by AlphaFold2 with pLDDT = 86.88 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MTADKIERTK  LGNSWLLDPD  KPWYHVMPRS  GWLNDPNGPI  YYKGKYHIFY  QHVVGTSQWD60
WACSWGHASS  ADLVHWKHEP  IALQPTPGTY  DAEGCWSGCS  TLDSNDTPVI  LYTAVRLREK120
PGLPLPPSAS  DLGLQMIESQ  CAAVCRPDDD  DLVTWTKQSR  PLIELPPPNE  GLVGFRDPYI180
IQRGVDGRPW  QLIIGSGVKG  KGGTLLLYTS  DNLLSGWKYR  GSFIKGKSRP  CDEWDLGEMW240
ECPFFVCLPQ  TSAEEQSSKE  TANGNAREAA  DSTAHVLCVS  PYPHYRKDRP  TNPCLCWVGQ300
LSNDTFNVED  ASGPHRLDLG  DILYAPNAFV  DGRGRTLMLA  WLQELRTGGA  YDYAGCLSLP360
RLLSLQGGRL  HQQPAPELAQ  LRLGEGVHLA  NLLVEEGAAA  ALPQIWGPSV  DVSFRLARGS420
CSAAGILLRA  WLRADADSEQ  PTAAAAVVDW  DAGTLEVIFS  TQWDRNALSF  GWDSVSKRVG480
GPIQIHEHAV  QLRVMVDHSA  VEIFTGSGET  LTTRVYRGDM  AAGDDPGMFF  IAKDGAASVT540
DIAAYTMGSI  WEQASDQPAK  THEPAME567

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH32(25-374)

MTADKIERTK  LGNSWLLDPD  KPWYHVMPRS  GWLNDPNGPI  YYKGKYHIFY  QHVVGTSQWD60
WACSWGHASS  ADLVHWKHEP  IALQPTPGTY  DAEGCWSGCS  TLDSNDTPVI  LYTAVRLREK120
PGLPLPPSAS  DLGLQMIESQ  CAAVCRPDDD  DLVTWTKQSR  PLIELPPPNE  GLVGFRDPYI180
IQRGVDGRPW  QLIIGSGVKG  KGGTLLLYTS  DNLLSGWKYR  GSFIKGKSRP  CDEWDLGEMW240
ECPFFVCLPQ  TSAEEQSSKE  TANGNAREAA  DSTAHVLCVS  PYPHYRKDRP  TNPCLCWVGQ300
LSNDTFNVED  ASGPHRLDLG  DILYAPNAFV  DGRGRTLMLA  WLQELRTGGA  YDYAGCLSLP360
RLLSLQGGRL  HQQPAPELAQ  LRLGEGVHLA  NLLVEEGAAA  ALPQIWGPSV  DVSFRLARGS420
CSAAGILLRA  WLRADADSEQ  PTAAAAVVDW  DAGTLEVIFS  TQWDRNALSF  GWDSVSKRVG480
GPIQIHEHAV  QLRVMVDHSA  VEIFTGSGET  LTTRVYRGDM  AAGDDPGMFF  IAKDGAASVT540
DIAAYTMGSI  WEQASDQPAK  THEPAME567

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help