Information for CAZyme ID: BDA44057.1
Basic Information
| GenBank ID | BDA44057.1 |
| Family | GT2 |
| Sequence Length | 606 |
| UniProt ID | A0A8J9RGY1(100,100) |
| Average pLDDT? | 73.60 |
| CAZy50 ID | 51626 |
| CAZy50 Rep | Yes, BDA44057.1 |
| Structure Cluster | SC_GT2_clus674 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 2315456 |
| Kingdom | Eukaryota |
| Phylum | Chlorophyta |
| Class | Trebouxiophyceae |
| Order | |
| Family | |
| Genus | Coccomyxa |
| Species | Coccomyxa sp. Obi |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MLRTHLLLET RACTKVHVLV VSDETVENDS RFHDLKAVAH ALANNGLRVT FGHASAFTER | 60 |
| IGHNDALTMF STYDAVLLQG PSATMLADFA AYSNTSVVRF VGVREAGVND DIPPLHERPE | 120 |
| VVVLGSDTGA ALPKEPGLWY TSHMELPVGS VKNPGAPQYQ ELVQRILPLC KAGSQMREAR | 180 |
| EKNENLTKDI MGLVIIAKNE ALRISDPLLS MKDHIDYWTV LDANSTDNTS EVVTQLMQGR | 240 |
| PGHLLHHNFT DFSTARNTAL NSHGQHTKYA VMLDADMSIP AAWRLRVTLQ RVAQLCAAWE | 300 |
| EDPMCFQAFQ VQAFVEGVKF FTDRIFPTAD IGTLDGWHYT YPVHEIPQLL KMPSSVSPEE | 360 |
| TTVKLLTVDI MTAEDPSHRR VARAKELDLR LLREERQKKP DDTRVAFYLA QTLQTVSMLP | 420 |
| EAVDAYEERV QMGGWYEEVF ESLLRKGRIL VDLKKDPMRD LMRAVETSPY RAEPFRVMAW | 480 |
| HHAIMSAACN ASGWFDSACF LRHRVAALHY AKRASKLPQP RKDLMFVDLS TYTEHALGAV | 540 |
| VDHAFQVAWK TQGAAYMGKE AASFLNNYRG RHLYNRTRAQ ELVDKYKELA AWLRHDRGVM | 600 |
| WAKPSV | 606 |
Predicted 3D structure by AlphaFold2 with pLDDT = 73.60 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MLRTHLLLET RACTKVHVLV VSDETVENDS RFHDLKAVAH ALANNGLRVT FGHASAFTER | 60 |
| IGHNDALTMF STYDAVLLQG PSATMLADFA AYSNTSVVRF VGVREAGVND DIPPLHERPE | 120 |
| VVVLGSDTGA ALPKEPGLWY TSHMELPVGS VKNPGAPQYQ ELVQRILPLC KAGSQMREAR | 180 |
| EKNENLTKDI MGLVIIAKNE ALRISDPLLS MKDHIDYWTV LDANSTDNTS EVVTQLMQGR | 240 |
| PGHLLHHNFT DFSTARNTAL NSHGQHTKYA VMLDADMSIP AAWRLRVTLQ RVAQLCAAWE | 300 |
| EDPMCFQAFQ VQAFVEGVKF FTDRIFPTAD IGTLDGWHYT YPVHEIPQLL KMPSSVSPEE | 360 |
| TTVKLLTVDI MTAEDPSHRR VARAKELDLR LLREERQKKP DDTRVAFYLA QTLQTVSMLP | 420 |
| EAVDAYEERV QMGGWYEEVF ESLLRKGRIL VDLKKDPMRD LMRAVETSPY RAEPFRVMAW | 480 |
| HHAIMSAACN ASGWFDSACF LRHRVAALHY AKRASKLPQP RKDLMFVDLS TYTEHALGAV | 540 |
| VDHAFQVAWK TQGAAYMGKE AASFLNNYRG RHLYNRTRAQ ELVDKYKELA AWLRHDRGVM | 600 |
| WAKPSV | 606 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.