CAZyme3D

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Entry ID

Information for CAZyme ID: BCW42752.1

Basic Information

GenBank IDBCW42752.1
FamilyCBM22, PL39
Sequence Length1312
UniProt IDBCW42752.1(MOD)Download
Average pLDDT?91.67
CAZy50 ID5961
CAZy50 RepYes, BCW42752.1
Structure ClusterSC_CBM22_clus21, SC_CBM22_clus23, SC_PL39_clus8
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2830991
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrococcaceae
GenusArthrobacter
SpeciesArthrobacter sp. StoSoilB3

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPQAPGTDVS  SGLEIPGGSF  EEAAIPALSG  GWSASGPGSA  LTDSASARTG  QYGARIASVS60
DTDPTILSSP  EVKLKKASNV  VYFRAMLRPV  EGSPRVELHV  RFTAANGSEI  NQQVARATAL120
KTGAWAELST  TAAIPSDAKN  VQVFVQALGA  GSVDVDDVSS  DVRQRRELVP  NGGAETLTAP180
APAAPTGWTA  ASTQWEPLVV  PNPSAEAGAS  TPENWKTFNY  ATTKAAMVWD  TSVAHTGSKS240
LRIDGVPGSI  GDWQQINYAP  VTPGTYKFGF  WVKGQNVAAG  DIRPLVIFRN  ANGQTVGGDK300
IVQNTVTNSD  WTYVESVLTA  PTGAVSVRID  YRLYNGGTAW  FDDVSIARQV  TADGVAQGNT360
AGADSGTAKA  GKNSLTLINQ  SEGDQSVLES  APFPVERLAG  YDLSAAVKTA  LTGAKAIAGL420
KYLDANGRTL  SEQLTGPVEG  ITDWGSAKVQ  AFPPAAATDA  KAFVRLAGKG  QAWFDDISLI480
RSTVIDPAIN  PNIARPSLLL  GAKDVNALKD  RVKNGVVGDE  YQRQLSLSDK  WTTQQLTDPS540
YLVNPLRGQS  NIYTVPAGAT  KMRLSAEFAG  KGSMMVDGVS  LTSLANNQPL  TIPDNSFENF600
GSGTSGWAAT  SGTTDAVVTK  TTEWAFADAA  SLQYAGASAA  SKASVALTQE  LPATPGGRYS660
LAATISQRGL  IEGTGLVWTV  SYTNDAGASV  GAAYKAPAYN  WDTHTRWDSP  LFEATQASAN720
VFLVTGNEEA  AKKAILGLKY  LVGESVWGMT  YALTTGGKPN  GEDGYGAVHF  GRAMGGFAQA780
LDLVINSKSM  SETDRAWLTD  RLGWMQDTQM  NLAYYDRSTD  AGRISNWNLD  RAIGVGMVSM840
ALPNLTSSSV  YRGHAQGEVR  WTLDNVVGDD  GAFPETIRYH  AAPLVRLVPF  VQALKRAGGT900
DMVNDPKLKK  MHSFLINVQT  PVDSTNTAAP  GTVLMPAIGD  ADYNEKPYRI  LGWNASLYKE960
SDPELSATMQ  WTWQRAGSPV  ADTGANPWAL  PPLLNTDPGL  PAKAPNVTSS  AIESVGYDIL1020
RDKGGTADEN  YLIMSDTPRP  LGHNHDDRTG  FSLWGKSVPL  ALDSGTGGYF  NGDNVWFNSA1080
AAHNVVQFQT  EGTWQGTAPT  VTTPIRYYSD  KVDVIQTGGA  TPGATDYQRN  VIQLKGGFNS1140
YLVWDRIKSA  APSRFNLHTL  TTSVDQAPGK  LTAHGYQGVD  LDVHLLGAAQ  PTVTLDTGRV1200
SGDWPQKNQQ  WIQLGQAAGT  DHTVLMHPRA  ADAKAIETIE  HRTGSATLKA  FELVAANGER1260
AMVFLNSGDS  SVQTSLDVPG  QWSPATAAES  GSLNGTTANV  AARQALVLLK  TS1312

Predicted 3D structure by AlphaFold2 with pLDDT = 91.67 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MPQAPGTDVS  SGLEIPGGSF  EEAAIPALSG  GWSASGPGSA  LTDSASARTG  QYGARIASVS60
DTDPTILSSP  EVKLKKASNV  VYFRAMLRPV  EGSPRVELHV  RFTAANGSEI  NQQVARATAL120
KTGAWAELST  TAAIPSDAKN  VQVFVQALGA  GSVDVDDVSS  DVRQRRELVP  NGGAETLTAP180
APAAPTGWTA  ASTQWEPLVV  PNPSAEAGAS  TPENWKTFNY  ATTKAAMVWD  TSVAHTGSKS240
LRIDGVPGSI  GDWQQINYAP  VTPGTYKFGF  WVKGQNVAAG  DIRPLVIFRN  ANGQTVGGDK300
IVQNTVTNSD  WTYVESVLTA  PTGAVSVRID  YRLYNGGTAW  FDDVSIARQV  TADGVAQGNT360
AGADSGTAKA  GKNSLTLINQ  SEGDQSVLES  APFPVERLAG  YDLSAAVKTA  LTGAKAIAGL420
KYLDANGRTL  SEQLTGPVEG  ITDWGSAKVQ  AFPPAAATDA  KAFVRLAGKG  QAWFDDISLI480
RSTVIDPAIN  PNIARPSLLL  GAKDVNALKD  RVKNGVVGDE  YQRQLSLSDK  WTTQQLTDPS540
YLVNPLRGQS  NIYTVPAGAT  KMRLSAEFAG  KGSMMVDGVS  LTSLANNQPL  TIPDNSFENF600
GSGTSGWAAT  SGTTDAVVTK  TTEWAFADAA  SLQYAGASAA  SKASVALTQE  LPATPGGRYS660
LAATISQRGL  IEGTGLVWTV  SYTNDAGASV  GAAYKAPAYN  WDTHTRWDSP  LFEATQASAN720
VFLVTGNEEA  AKKAILGLKY  LVGESVWGMT  YALTTGGKPN  GEDGYGAVHF  GRAMGGFAQA780
LDLVINSKSM  SETDRAWLTD  RLGWMQDTQM  NLAYYDRSTD  AGRISNWNLD  RAIGVGMVSM840
ALPNLTSSSV  YRGHAQGEVR  WTLDNVVGDD  GAFPETIRYH  AAPLVRLVPF  VQALKRAGGT900
DMVNDPKLKK  MHSFLINVQT  PVDSTNTAAP  GTVLMPAIGD  ADYNEKPYRI  LGWNASLYKE960
SDPELSATMQ  WTWQRAGSPV  ADTGANPWAL  PPLLNTDPGL  PAKAPNVTSS  AIESVGYDIL1020
RDKGGTADEN  YLIMSDTPRP  LGHNHDDRTG  FSLWGKSVPL  ALDSGTGGYF  NGDNVWFNSA1080
AAHNVVQFQT  EGTWQGTAPT  VTTPIRYYSD  KVDVIQTGGA  TPGATDYQRN  VIQLKGGFNS1140
YLVWDRIKSA  APSRFNLHTL  TTSVDQAPGK  LTAHGYQGVD  LDVHLLGAAQ  PTVTLDTGRV1200
SGDWPQKNQQ  WIQLGQAAGT  DHTVLMHPRA  ADAKAIETIE  HRTGSATLKA  FELVAANGER1260
AMVFLNSGDS  SVQTSLDVPG  QWSPATAAES  GSLNGTTANV  AARQALVLLK  TS1312

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM22(30-146)+CBM61(200-345)+PL39(772-1271)

MPQAPGTDVS  SGLEIPGGSF  EEAAIPALSG  GWSASGPGSA  LTDSASARTG  QYGARIASVS60
DTDPTILSSP  EVKLKKASNV  VYFRAMLRPV  EGSPRVELHV  RFTAANGSEI  NQQVARATAL120
KTGAWAELST  TAAIPSDAKN  VQVFVQALGA  GSVDVDDVSS  DVRQRRELVP  NGGAETLTAP180
APAAPTGWTA  ASTQWEPLVV  PNPSAEAGAS  TPENWKTFNY  ATTKAAMVWD  TSVAHTGSKS240
LRIDGVPGSI  GDWQQINYAP  VTPGTYKFGF  WVKGQNVAAG  DIRPLVIFRN  ANGQTVGGDK300
IVQNTVTNSD  WTYVESVLTA  PTGAVSVRID  YRLYNGGTAW  FDDVSIARQV  TADGVAQGNT360
AGADSGTAKA  GKNSLTLINQ  SEGDQSVLES  APFPVERLAG  YDLSAAVKTA  LTGAKAIAGL420
KYLDANGRTL  SEQLTGPVEG  ITDWGSAKVQ  AFPPAAATDA  KAFVRLAGKG  QAWFDDISLI480
RSTVIDPAIN  PNIARPSLLL  GAKDVNALKD  RVKNGVVGDE  YQRQLSLSDK  WTTQQLTDPS540
YLVNPLRGQS  NIYTVPAGAT  KMRLSAEFAG  KGSMMVDGVS  LTSLANNQPL  TIPDNSFENF600
GSGTSGWAAT  SGTTDAVVTK  TTEWAFADAA  SLQYAGASAA  SKASVALTQE  LPATPGGRYS660
LAATISQRGL  IEGTGLVWTV  SYTNDAGASV  GAAYKAPAYN  WDTHTRWDSP  LFEATQASAN720
VFLVTGNEEA  AKKAILGLKY  LVGESVWGMT  YALTTGGKPN  GEDGYGAVHF  GRAMGGFAQA780
LDLVINSKSM  SETDRAWLTD  RLGWMQDTQM  NLAYYDRSTD  AGRISNWNLD  RAIGVGMVSM840
ALPNLTSSSV  YRGHAQGEVR  WTLDNVVGDD  GAFPETIRYH  AAPLVRLVPF  VQALKRAGGT900
DMVNDPKLKK  MHSFLINVQT  PVDSTNTAAP  GTVLMPAIGD  ADYNEKPYRI  LGWNASLYKE960
SDPELSATMQ  WTWQRAGSPV  ADTGANPWAL  PPLLNTDPGL  PAKAPNVTSS  AIESVGYDIL1020
RDKGGTADEN  YLIMSDTPRP  LGHNHDDRTG  FSLWGKSVPL  ALDSGTGGYF  NGDNVWFNSA1080
AAHNVVQFQT  EGTWQGTAPT  VTTPIRYYSD  KVDVIQTGGA  TPGATDYQRN  VIQLKGGFNS1140
YLVWDRIKSA  APSRFNLHTL  TTSVDQAPGK  LTAHGYQGVD  LDVHLLGAAQ  PTVTLDTGRV1200
SGDWPQKNQQ  WIQLGQAAGT  DHTVLMHPRA  ADAKAIETIE  HRTGSATLKA  FELVAANGER1260
AMVFLNSGDS  SVQTSLDVPG  QWSPATAAES  GSLNGTTANV  AARQALVLLK  TS1312

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help