CAZyme3D

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Entry ID

Information for CAZyme ID: BCT45591.1

Basic Information

GenBank IDBCT45591.1
FamilyCBM66, GH32
Sequence Length1941
UniProt IDA0A1C6DL02(98.4,100)Download
Average pLDDT?82.44
CAZy50 ID1659
CAZy50 RepYes, BCT45591.1
Structure ClusterSC_CBM66_clus17, SC_GH32_clus78
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1796635
KingdomBacteria
PhylumBacillota
ClassErysipelotrichia
OrderErysipelotrichales
FamilyErysipelotrichaceae
GenusLongicatena
SpeciesLongicatena caecimuris

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTKKVLKAAT  VLMTCSMVVS  SIAPTSIVAA  TNPKMVSQMQ  KSIEEMTLSD  FIGGDKDVQE60
NRILLKNTGG  DNFAVSNEIN  ELVNDFHYSA  DVELTAGGEN  SAALVFGIGD  KDKPSTTWKG120
ANVVREQDGN  IMRVFKVPAG  EDYAEQIQLT  DYDITKKIHL  DLDVKADGTF  IYKVQSEGGS180
LYQMEGKIDA  WVGGYIGILT  FKTEAAYSNI  KFTDRTIRTV  DNFKTNIENL  RGLQGIWTKG240
EDGLTSSGTG  DNFAISDTKS  QDFTYQVHTV  NKHGKGAGAL  LFRVENPNDP  KAGCYAFNAD300
YTNNIFKLFE  FPTGGSLAEI  PLSEVAPNED  GSYDLKVTVV  GSDIYAYVNG  KGVAHVQDDR360
HRDGYLGLLT  WDGSVVYQNL  YYQNETERPN  ISEPELTTLA  LSDGVSITPA  IDPRTTIYGM420
DIAAGIDEVT  LKPSGNGKVY  ITIKDRNLRV  TRPREEVKDA  YTLRADDFET  NFANVMISVE480
RDGFTKTYQF  AVNKWFSNEE  LAAQENRAQF  HVTPQINFMN  DPNGMVYDST  DGYWHLFYQY540
SPNNNFYKQS  WAHVRSKDLV  NWEQQPLGIQ  IDDLGLIFSG  SAVEDKDNTS  GFFTDNQEGD600
SKLVAIFTYH  NEKNGKQSQA  IAYSKDHGTT  WIKYEGNPVL  PNEGNTLSGN  DFRDPKVFKI660
DGDTKWYMIT  AGGAAQLFAS  EDLKTWTRTQ  NLTYKNGDQI  YSECPGLIPA  KVNGTGEQKW720
IYNGSAGFYV  IGHMERDGDV  FKWVADTDRI  NVDSNEDPWR  GFGKYATMTF  FEDGTGKNRQ780
IGISWLQDFT  EFDGKIYKGS  QSLPQEYGLI  TDRDGKYVVT  SNVVEEVNKL  RDQEHILYQT840
ANKKVSANDD  NILRGVSGIY  YDVEGTFTLG  SSKEFGFKLR  QGGGKELIYK  YDVVNKKMVL900
DARNAGHYMN  SGNFSYQLTP  LEGNKIKLRI  LVDQGAVEAF  GNDGEANIST  TLYQDNHNIA960
MSFFTNDGDV  TIDDLKIYDM  KSMYSKKSGS  ETAKTQLYVS  AKERVHVDTE  FTVDANVYPN1020
LSEMNDIKWT  LPEGLQIVKE  EKGSITVKAL  KAGVYRIQAT  VGELSDEVSV  QAIVPSLDSN1080
ITNWNTNEVW  EITEEGMEGK  NTGGDSFQLS  DTKISKDQPF  VLEADMSIKE  GIAAGLVFGV1140
KDKNAPTSLW  FCVNVERNEN  GAIAKIFKNM  NGQDWHIDKL  LPPAIVDADT  YHLKVAYDGK1200
GTLTYYVNDL  QIAQKSDADI  VDGYIGVQTF  RSTTVFNHIK  VAFPQAVVND  VTLPEEVLVA1260
FKENNVTAKL  PKDVMVTLDN  GNVLKETISW  DLSNIDTAVS  GDYKVKGTVL  GKEVELRVFV1320
QADKTALKKI  IEQADTYEAD  AYTEESYLNL  MTVVTKAREV  LKDDKATQDA  VNAQVTAIEK1380
AIAALEKEEK  PIVVDKAELK  KALDKAKAVQ  ADGYTSASYA  KLQEAIKAAE  KVYADDKATQ1440
DAVNAQVTAI  EKAIAALEKE  EKPIVVDKAE  LKKALDKAKA  IQADGYTSAS  YAKLQEAIKA1500
AEKVYADDKA  TQDAVNAQVT  AIEKAISALE  KEEKPIVVDK  AELKKALDKA  KAIQADGYTS1560
ASYAKLQEAI  KAAEKVYADD  KAIQDAVNAQ  VTAIEKAIAA  LEKEEKPIVV  DKAELKKALD1620
KAKAVQADGY  TSASYAKLQE  AIKAAEKVYA  DDKATQDAVN  AQVTAIEKAI  SALEKEETPI1680
VANKAELKKA  LDKAKAIQAD  GYTSASYAKL  QEAIKAAEKV  YADDKATQDA  VNAQVTAIEK1740
AISALKKEET  PIVVDKAELK  NALDEAKAIQ  AEGFTSASYA  KLQKAIKAAE  KVYADAAASQ1800
DDVKVQVKNI  QKAIQSLEAV  SQTSAKAILQ  NLVEKAEKKK  ESAYTAASWK  TFEKALKDAK1860
NILQKKDATK  VEIQQAYETL  VTALQQLKAI  EQHKKEPVNT  TDKTDTPKTG  DTSQAQTAGI1920
MVILSGAVLA  VLRKKRKYVE  E1941

Predicted 3D structure by AlphaFold2 with pLDDT = 82.44 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MTKKVLKAAT  VLMTCSMVVS  SIAPTSIVAA  TNPKMVSQMQ  KSIEEMTLSD  FIGGDKDVQE60
NRILLKNTGG  DNFAVSNEIN  ELVNDFHYSA  DVELTAGGEN  SAALVFGIGD  KDKPSTTWKG120
ANVVREQDGN  IMRVFKVPAG  EDYAEQIQLT  DYDITKKIHL  DLDVKADGTF  IYKVQSEGGS180
LYQMEGKIDA  WVGGYIGILT  FKTEAAYSNI  KFTDRTIRTV  DNFKTNIENL  RGLQGIWTKG240
EDGLTSSGTG  DNFAISDTKS  QDFTYQVHTV  NKHGKGAGAL  LFRVENPNDP  KAGCYAFNAD300
YTNNIFKLFE  FPTGGSLAEI  PLSEVAPNED  GSYDLKVTVV  GSDIYAYVNG  KGVAHVQDDR360
HRDGYLGLLT  WDGSVVYQNL  YYQNETERPN  ISEPELTTLA  LSDGVSITPA  IDPRTTIYGM420
DIAAGIDEVT  LKPSGNGKVY  ITIKDRNLRV  TRPREEVKDA  YTLRADDFET  NFANVMISVE480
RDGFTKTYQF  AVNKWFSNEE  LAAQENRAQF  HVTPQINFMN  DPNGMVYDST  DGYWHLFYQY540
SPNNNFYKQS  WAHVRSKDLV  NWEQQPLGIQ  IDDLGLIFSG  SAVEDKDNTS  GFFTDNQEGD600
SKLVAIFTYH  NEKNGKQSQA  IAYSKDHGTT  WIKYEGNPVL  PNEGNTLSGN  DFRDPKVFKI660
DGDTKWYMIT  AGGAAQLFAS  EDLKTWTRTQ  NLTYKNGDQI  YSECPGLIPA  KVNGTGEQKW720
IYNGSAGFYV  IGHMERDGDV  FKWVADTDRI  NVDSNEDPWR  GFGKYATMTF  FEDGTGKNRQ780
IGISWLQDFT  EFDGKIYKGS  QSLPQEYGLI  TDRDGKYVVT  SNVVEEVNKL  RDQEHILYQT840
ANKKVSANDD  NILRGVSGIY  YDVEGTFTLG  SSKEFGFKLR  QGGGKELIYK  YDVVNKKMVL900
DARNAGHYMN  SGNFSYQLTP  LEGNKIKLRI  LVDQGAVEAF  GNDGEANIST  TLYQDNHNIA960
MSFFTNDGDV  TIDDLKIYDM  KSMYSKKSGS  ETAKTQLYVS  AKERVHVDTE  FTVDANVYPN1020
LSEMNDIKWT  LPEGLQIVKE  EKGSITVKAL  KAGVYRIQAT  VGELSDEVSV  QAIVPSLDSN1080
ITNWNTNEVW  EITEEGMEGK  NTGGDSFQLS  DTKISKDQPF  VLEADMSIKE  GIAAGLVFGV1140
KDKNAPTSLW  FCVNVERNEN  GAIAKIFKNM  NGQDWHIDKL  LPPAIVDADT  YHLKVAYDGK1200
GTLTYYVNDL  QIAQKSDADI  VDGYIGVQTF  RSTTVFNHIK  VAFPQAVVND  VTLPEEVLVA1260
FKENNVTAKL  PKDVMVTLDN  GNVLKETISW  DLSNIDTAVS  GDYKVKGTVL  GKEVELRVFV1320
QADKTALKKI  IEQADTYEAD  AYTEESYLNL  MTVVTKAREV  LKDDKATQDA  VNAQVTAIEK1380
AIAALEKEEK  PIVVDKAELK  KALDKAKAVQ  ADGYTSASYA  KLQEAIKAAE  KVYADDKATQ1440
DAVNAQVTAI  EKAIAALEKE  EKPIVVDKAE  LKKALDKAKA  IQADGYTSAS  YAKLQEAIKA1500
AEKVYADDKA  TQDAVNAQVT  AIEKAISALE  KEEKPIVVDK  AELKKALDKA  KAIQADGYTS1560
ASYAKLQEAI  KAAEKVYADD  KAIQDAVNAQ  VTAIEKAIAA  LEKEEKPIVV  DKAELKKALD1620
KAKAVQADGY  TSASYAKLQE  AIKAAEKVYA  DDKATQDAVN  AQVTAIEKAI  SALEKEETPI1680
VANKAELKKA  LDKAKAIQAD  GYTSASYAKL  QEAIKAAEKV  YADDKATQDA  VNAQVTAIEK1740
AISALKKEET  PIVVDKAELK  NALDEAKAIQ  AEGFTSASYA  KLQKAIKAAE  KVYADAAASQ1800
DDVKVQVKNI  QKAIQSLEAV  SQTSAKAILQ  NLVEKAEKKK  ESAYTAASWK  TFEKALKDAK1860
NILQKKDATK  VEIQQAYETL  VTALQQLKAI  EQHKKEPVNT  TDKTDTPKTG  DTSQAQTAGI1920
MVILSGAVLA  VLRKKRKYVE  E1941

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM66(53-210)+CBM66(225-379)+GH32(511-816)+CBM66(1079-1238)

MTKKVLKAAT  VLMTCSMVVS  SIAPTSIVAA  TNPKMVSQMQ  KSIEEMTLSD  FIGGDKDVQE60
NRILLKNTGG  DNFAVSNEIN  ELVNDFHYSA  DVELTAGGEN  SAALVFGIGD  KDKPSTTWKG120
ANVVREQDGN  IMRVFKVPAG  EDYAEQIQLT  DYDITKKIHL  DLDVKADGTF  IYKVQSEGGS180
LYQMEGKIDA  WVGGYIGILT  FKTEAAYSNI  KFTDRTIRTV  DNFKTNIENL  RGLQGIWTKG240
EDGLTSSGTG  DNFAISDTKS  QDFTYQVHTV  NKHGKGAGAL  LFRVENPNDP  KAGCYAFNAD300
YTNNIFKLFE  FPTGGSLAEI  PLSEVAPNED  GSYDLKVTVV  GSDIYAYVNG  KGVAHVQDDR360
HRDGYLGLLT  WDGSVVYQNL  YYQNETERPN  ISEPELTTLA  LSDGVSITPA  IDPRTTIYGM420
DIAAGIDEVT  LKPSGNGKVY  ITIKDRNLRV  TRPREEVKDA  YTLRADDFET  NFANVMISVE480
RDGFTKTYQF  AVNKWFSNEE  LAAQENRAQF  HVTPQINFMN  DPNGMVYDST  DGYWHLFYQY540
SPNNNFYKQS  WAHVRSKDLV  NWEQQPLGIQ  IDDLGLIFSG  SAVEDKDNTS  GFFTDNQEGD600
SKLVAIFTYH  NEKNGKQSQA  IAYSKDHGTT  WIKYEGNPVL  PNEGNTLSGN  DFRDPKVFKI660
DGDTKWYMIT  AGGAAQLFAS  EDLKTWTRTQ  NLTYKNGDQI  YSECPGLIPA  KVNGTGEQKW720
IYNGSAGFYV  IGHMERDGDV  FKWVADTDRI  NVDSNEDPWR  GFGKYATMTF  FEDGTGKNRQ780
IGISWLQDFT  EFDGKIYKGS  QSLPQEYGLI  TDRDGKYVVT  SNVVEEVNKL  RDQEHILYQT840
ANKKVSANDD  NILRGVSGIY  YDVEGTFTLG  SSKEFGFKLR  QGGGKELIYK  YDVVNKKMVL900
DARNAGHYMN  SGNFSYQLTP  LEGNKIKLRI  LVDQGAVEAF  GNDGEANIST  TLYQDNHNIA960
MSFFTNDGDV  TIDDLKIYDM  KSMYSKKSGS  ETAKTQLYVS  AKERVHVDTE  FTVDANVYPN1020
LSEMNDIKWT  LPEGLQIVKE  EKGSITVKAL  KAGVYRIQAT  VGELSDEVSV  QAIVPSLDSN1080
ITNWNTNEVW  EITEEGMEGK  NTGGDSFQLS  DTKISKDQPF  VLEADMSIKE  GIAAGLVFGV1140
KDKNAPTSLW  FCVNVERNEN  GAIAKIFKNM  NGQDWHIDKQ  LPPAIVDADT  YHLKVAYDGK1200
GTLTYYVNDL  LIAQKSDADI  VDGYIGVQTF  RSTTVFNHIK  VAFPQAVVND  VTLPEEVLVA1260
FKENDVTAKL  PKDVMVTLDN  GNVLKETISW  DLSNVDTAVS  GDYKVKGTVL  GKEVELCVFV1320
QADKTALKKI  IEQADTYEAD  AYTEESYLNL  MTVVTKAKEV  LKDDKATQDA  VNAQVTAIEK1380
AISALEKEEK  PIVVDKAELK  KALDKAKAIQ  ADGYTSASYA  KLQEAIKTAE  KVYADDKATQ1440
DAVNAQVTAI  EKAIAALEKE  EKPIVVDKAE  LKKALDKAKA  VQADGYTSAS  YAKLQEAIKT1500
AEKVYTDDKA  TQDAVNAQVT  AIEKAIAALE  KEEKPIVVNK  AELKNALDEA  KAIQADGYTS1560
ASYTKLQEAI  KAAEKVYTDD  KATQDAVNAQ  VTAIEKAIAA  LEKEETPIVV  NKAELKKALD1620
KAKAVQADGY  TSASYAKLQE  AIKEAEKVYT  DDKATQDAVN  AQVTAIEKAI  AALEKEEKPI1680
VVNKAELKKA  LDKAKAMQAD  GYTSASYAKL  QEAIKAAEKV  YADDKATQDA  VNAQVTAIEK1740
AISSLEKEET  PIVVDKAELK  NALDEAKAIQ  AEGFTSASYA  KLQKAIKAAE  KVYADAAASQ1800
DDVNVQVKNI  QKAIQSLEAV  SQTSAKAILQ  NLVEKAEKKK  ESAYTATSWK  TFEKALKDAK1860
NILQKKDATK  VEIQQAYETL  VTALQQLKAI  EQHKKEPVNT  TDKTDTPKTG  DTSQAQTAGI1920
MVILSGAVLA  VLRKKRKYVE  E1941

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help