Basic information |
Taxonomy |
Protein Sequence |
Structure visualization |
Binding Residues |
dbCAN domains |
Homology within Cluster
Information for CAZyme ID: BCM92695.1
Basic Information
| GenBank ID | BCM92695.1 |
| Family | CBM13, GH128 |
| Sequence Length | 1761 |
| UniProt ID | BCM92695.1(MOD) |
| Average pLDDT? | 79.13 |
| CAZy50 ID | 2344 |
| CAZy50 Rep | Yes, BCM92695.1 |
| Structure Cluster | SC_CBM13_clus56, SC_CBM13_clus68, SC_GH128_clus54 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 2783868 |
| Kingdom | Bacteria |
| Phylum | Abditibacteriota |
| Class | |
| Order | |
| Family | |
| Genus | |
| Species | Abditibacteriota bacterium |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MKQFVWHWKQ SGIAAVFALI LVLLFPSMAS AQTLGISGGV QTYSTLTNTA VTMTGKSELH | 60 |
| VTGTSSPIAG TTINLNSPDA WFWLDNIRPQ TVNSTYLSQI RISGSAAVQG TNVRVVQYAL | 120 |
| GTVVIPHAPS YQPLQAWSGP NFSGTSQKFS LYTYYNTAAA LGVLNSNVSS FKLKRGYMAT | 180 |
| FATQANGTGS SKVYVAQDSD VEVSLLPDSL NNAIQFVRVF PWRWVSKKGS CDVSADTLNS | 240 |
| AWFYNWNNNQ SSSLNWEYVP IRQQRWWPGY PTNKPDSTHL SGYNEPNNPV EDAYKTLNNG | 300 |
| SVDAAISAWP ELLECGLRVG SPAVTDGGES WLYSFMDKAK AANLRVDYVT IHFYRAGYSS | 360 |
| TQLYNWLKGI HDRTGKPIWV TEFNNGANWT SGADPTLQQN ATVIGSFINM MNSTPWIERY | 420 |
| AVYSNVEDVR KMVDSSGNLT PAGTVYKNTA SPIGYIQEPT TSTEHRGIAH LPFDGNALDT | 480 |
| SGYNNDGTAV DNPTYTNGSQ GQAIQLDGAN SYVQMPTGMA SGASFSFAGW IYWDGGSNWQ | 540 |
| RIFDFGNGSS QYLFLTPQSG SGTLRFAIKN GGAEQIVETS ALPTGKWTHV ALTLTGGVAK | 600 |
| LYVDGALKTT NSAVTIKPGD FSPAVNYIGK SQFSDPLFKG RLDDVYIADS AFTAAQIAAM | 660 |
| MTNTAPQFTS TTIYRGPAHT GVALSATLAG AATDPDAGDS ITYSKTSGPS WLTVATNGTL | 720 |
| SGTPSTSVQG TQEFVVTATD SKGASASVNL FIYLAEFDGV YSLTPKHVTG KVLDVLNANP | 780 |
| ADGASLVINT YTGASSQRFM VEMQSDGTYR IRTSLTGNRA VNLPNGTTTN GTKIKLGDDT | 840 |
| GNDSQRWVIT QISDGWYQIA PKNNLAKGID VNGASTQNGA LVQSWDYSGG TNQLWHLTPS | 900 |
| TELYSTELPD GLYRLMPRHA TGKALAVLNN DPNNSASLGI WTTDKSDSQK FLVDVQSDGT | 960 |
| YRIRTNLTGN RAVELPSGTT TNGTKIKLWD NNNLAPQRWY LIPLDNGWYK IAPKGDITKS | 1020 |
| MDVNGVSTQD GALVQSWDYW GGTGQQWQFT LASIPNVAPT ISSVSITPVN PTTNSMLAAT | 1080 |
| VSASDANDDT LTYSYVWKKN DIVLGGETGS MLDLSTVGNG DRGDKITVTA TVNDGTVNSA | 1140 |
| AMTAEAVTIG NSAPVVSSVN LTPSTPGTNS TLSATVSATD ADGDNVTYTY VWKKNGSVIA | 1200 |
| GETGATLDLS KSGNGDDGDS ITATVTANDG SADSVAVTSG GSIINTLNTA PSVVSISPSS | 1260 |
| ATDTVGNSRT FTVTVSDGNG VGDIKNVWFL ANTVLDWSDG ATLVYDKVNN QLFLRDNDHF | 1320 |
| NGPITPGSGT LSNGAVTIVG SSVVVTPQAN GTTLAITFAM QVKNGMVGTN GVWGRVEDLA | 1380 |
| GTTDQSANNG QFGFVQKATW RVNGTSGTQQ APTLTVTPGV RGTITPETVG SEFNVTLDLT | 1440 |
| DANGLGDIQS AYILVNDKGN FGWSNGFTLY YEARTNRLYL RSTDGNSFLG GFVVGQGTGT | 1500 |
| LENEAGSIRL SGCTMTPITN GVRLVIVVTP KSALVGTKQV WTRIQDLVGN VAADSNVTFG | 1560 |
| FKSEGLLVIS NAQEAKPSAS VSIAGTAAGI GTSHTVATAT ETTFTLNLSD TDGAGELKSG | 1620 |
| WLLINQPGVL DWTNCIALVY EARNNVLRLR STDGSRFSDA IVGTTTGTLS NGAVSIRLSG | 1680 |
| TSVTRTAQGI TLTLAVTPKA GFTGTKQIWS RVEDTVGNVQ AGQDAAQGYN TEGTVQITNN | 1740 |
| ASVNNASATN GLSSTPSAPN S | 1761 |
Predicted 3D structure by AlphaFold2 with pLDDT = 79.13 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MKQFVWHWKQ SGIAAVFALI LVLLFPSMAS AQTLGISGGV QTYSTLTNTA VTMTGKSELH | 60 |
| VTGTSSPIAG TTINLNSPDA WFWLDNIRPQ TVNSTYLSQI RISGSAAVQG TNVRVVQYAL | 120 |
| GTVVIPHAPS YQPLQAWSGP NFSGTSQKFS LYTYYNTAAA LGVLNSNVSS FKLKRGYMAT | 180 |
| FATQANGTGS SKVYVAQDSD VEVSLLPDSL NNAIQFVRVF PWRWVSKKGS CDVSADTLNS | 240 |
| AWFYNWNNNQ SSSLNWEYVP IRQQRWWPGY PTNKPDSTHL SGYNEPNNPV EDAYKTLNNG | 300 |
| SVDAAISAWP ELLECGLRVG SPAVTDGGES WLYSFMDKAK AANLRVDYVT IHFYRAGYSS | 360 |
| TQLYNWLKGI HDRTGKPIWV TEFNNGANWT SGADPTLQQN ATVIGSFINM MNSTPWIERY | 420 |
| AVYSNVEDVR KMVDSSGNLT PAGTVYKNTA SPIGYIQEPT TSTEHRGIAH LPFDGNALDT | 480 |
| SGYNNDGTAV DNPTYTNGSQ GQAIQLDGAN SYVQMPTGMA SGASFSFAGW IYWDGGSNWQ | 540 |
| RIFDFGNGSS QYLFLTPQSG SGTLRFAIKN GGAEQIVETS ALPTGKWTHV ALTLTGGVAK | 600 |
| LYVDGALKTT NSAVTIKPGD FSPAVNYIGK SQFSDPLFKG RLDDVYIADS AFTAAQIAAM | 660 |
| MTNTAPQFTS TTIYRGPAHT GVALSATLAG AATDPDAGDS ITYSKTSGPS WLTVATNGTL | 720 |
| SGTPSTSVQG TQEFVVTATD SKGASASVNL FIYLAEFDGV YSLTPKHVTG KVLDVLNANP | 780 |
| ADGASLVINT YTGASSQRFM VEMQSDGTYR IRTSLTGNRA VNLPNGTTTN GTKIKLGDDT | 840 |
| GNDSQRWVIT QISDGWYQIA PKNNLAKGID VNGASTQNGA LVQSWDYSGG TNQLWHLTPS | 900 |
| TELYSTELPD GLYRLMPRHA TGKALAVLNN DPNNSASLGI WTTDKSDSQK FLVDVQSDGT | 960 |
| YRIRTNLTGN RAVELPSGTT TNGTKIKLWD NNNLAPQRWY LIPLDNGWYK IAPKGDITKS | 1020 |
| MDVNGVSTQD GALVQSWDYW GGTGQQWQFT LASIPNVAPT ISSVSITPVN PTTNSMLAAT | 1080 |
| VSASDANDDT LTYSYVWKKN DIVLGGETGS MLDLSTVGNG DRGDKITVTA TVNDGTVNSA | 1140 |
| AMTAEAVTIG NSAPVVSSVN LTPSTPGTNS TLSATVSATD ADGDNVTYTY VWKKNGSVIA | 1200 |
| GETGATLDLS KSGNGDDGDS ITATVTANDG SADSVAVTSG GSIINTLNTA PSVVSISPSS | 1260 |
| ATDTVGNSRT FTVTVSDGNG VGDIKNVWFL ANTVLDWSDG ATLVYDKVNN QLFLRDNDHF | 1320 |
| NGPITPGSGT LSNGAVTIVG SSVVVTPQAN GTTLAITFAM QVKNGMVGTN GVWGRVEDLA | 1380 |
| GTTDQSANNG QFGFVQKATW RVNGTSGTQQ APTLTVTPGV RGTITPETVG SEFNVTLDLT | 1440 |
| DANGLGDIQS AYILVNDKGN FGWSNGFTLY YEARTNRLYL RSTDGNSFLG GFVVGQGTGT | 1500 |
| LENEAGSIRL SGCTMTPITN GVRLVIVVTP KSALVGTKQV WTRIQDLVGN VAADSNVTFG | 1560 |
| FKSEGLLVIS NAQEAKPSAS VSIAGTAAGI GTSHTVATAT ETTFTLNLSD TDGAGELKSG | 1620 |
| WLLINQPGVL DWTNCIALVY EARNNVLRLR STDGSRFSDA IVGTTTGTLS NGAVSIRLSG | 1680 |
| TSVTRTAQGI TLTLAVTPKA GFTGTKQIWS RVEDTVGNVQ AGQDAAQGYN TEGTVQITNN | 1740 |
| ASVNNASATN GLSSTPSAPN S | 1761 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.