CAZyme3D

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Entry ID

Information for CAZyme ID: BCK73386.1

Basic Information

GenBank IDBCK73386.1
FamilyGH88
Sequence Length415
UniProt IDA0A640T5R1(95.0,100)Download
Average pLDDT?88.10
CAZy50 ID91390
CAZy50 RepYes, BCK73386.1
Structure ClusterSC_GH88_clus23
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID249582
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderKitasatosporales
FamilyStreptomycetaceae
GenusStreptomyces
SpeciesStreptomyces libani

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MHETPHGTAH  EKSHQQSREA  TGQVPWADRA  WAAVLERTGQ  TAAEVGPRFP  LYADPETGTW60
KTTSRGSWTG  GFWAGLLWLR  ALASGAPQDR  SAAAACTRRL  AHWIDQDTAT  RGLIFWYGTG120
LAAGPGGDGL  AAGLRERAAR  SCLAAYDPER  QLVPWGGAFG  GPGMLARVDA  VPGLVPLLAG180
LGAEGERAAY  GHLTRHLTLS  RSEKPPRPAW  QAGPDDGWTP  CAEPAPGWSR  TTPWLLLGLA240
DGLHCLADGL  NSREAGALWE  VAGQLTAPRL  APADRITAPR  LAPAAPLTAP  PLAPAARFTV300
LLPSPAAPLV  PPAQEDQPSG  PLDTSAAAIE  SVALLKLAAL  ARATGRGSEA  DRLTARARQI360
LHRLCTGHLS  ARGALTDGCY  DAARALAPRH  ELIWGDFFLA  VGLALLTGRM  APFAT415

Predicted 3D structure by AlphaFold2 with pLDDT = 88.10 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MHETPHGTAH  EKSHQQSREA  TGQVPWADRA  WAAVLERTGQ  TAAEVGPRFP  LYADPETGTW60
KTTSRGSWTG  GFWAGLLWLR  ALASGAPQDR  SAAAACTRRL  AHWIDQDTAT  RGLIFWYGTG120
LAAGPGGDGL  AAGLRERAAR  SCLAAYDPER  QLVPWGGAFG  GPGMLARVDA  VPGLVPLLAG180
LGAEGERAAY  GHLTRHLTLS  RSEKPPRPAW  QAGPDDGWTP  CAEPAPGWSR  TTPWLLLGLA240
DGLHCLADGL  NSREAGALWE  VAGQLTAPRL  APADRITAPR  LAPAAPLTAP  PLAPAARFTV300
LLPSPAAPLV  PPAQEDQPSG  PLDTSAAAIE  SVALLKLAAL  ARATGRGSEA  DRLTARARQI360
LHRLCTGHLS  ARGALTDGCY  DAARALAPRH  ELIWGDFFLA  VGLALLTGRM  APFAT415

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) :

MHETPHGTAH  EKSREQSHQQ  SREATGHVPW  ADRAWAAVLE  RTGQTAAEVG  PRFPLYADPE60
TGTWKTTSRG  SWTGGFWAGL  LWLRALASGA  PQDRSAAAAC  TRRLAHWIDQ  DTATRGLIFW120
YGTGLAAGPG  GDGLAAGLRE  RAARSCLAAY  EPERQLVPWG  EAFGGPGMLA  RVDAVPGLVP180
LLAGLGAEGE  RAAYGHLTRH  LTLSRSENPP  RPAWQAGPDD  GWTPCAEPAP  GWSRTTPWLL240
LGLADGLHCL  ADGIGSRAAG  ALWEAAGQLT  APRLAPADRI  TAPRLAPAAP  LTAPPLAPAA300
RFTVLLPSPA  APLVPPAQED  QPSGPLDTSA  AAIESVALLK  LAALARATGR  GSEADRLTAR360
ARQILHRLCT  GHLTARGALT  DGCYDAARAL  APRHELIWGD  FFLAVGLALL  TGRMAPFAT419

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help