CAZyme3D

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Entry ID

Information for CAZyme ID: BCK01130.1

Basic Information

GenBank IDBCK01130.1
FamilyGH5_46
Sequence Length557
UniProt IDA0A7M3S962(100,100)Download
Average pLDDT?94.14
CAZy50 ID58515
CAZy50 RepYes, BCK01130.1
Structure ClusterSC_GH5_clus238
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1727145
KingdomBacteria
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusAnaerocolumna
SpeciesAnaerocolumna chitinilytica

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MQENVVKGFL  DVDGTRIINE  EGKTVLLKGW  GLGNWLLCEG  YMWKSMGGER  FDRPRRIEEV60
IEELTGAEYS  KEFWMRFREN  YINEADIRRM  KELGYNSVRI  PINSRLFLKE  APGLNWVEEG120
FLLLDRVIDW  CEKYGLYAFI  DLHGAPGGQT  GANIDDCIDD  MPRLFIDEDC  FQKGIQLWKR180
LAERYSDRYI  VGGYDLLNEP  LRPKRHAKDK  EVEYLVPRLC  EFYEKATAEI  RKVDKKHLLS240
IEGHHWATAN  DVFYKKYDDK  MVIHFHRYAC  IPDKSCYRDY  LELREKWNVP  LWLGETGENT300
IEWFTAMYPL  AESLGIGYNI  WPWKKMDCTN  SPCSVPMPKD  WNLIIDYTNG  GMHPGYDKAK360
EILEEYLHNM  LLDNCDFKEE  VSAAVLREPG  SVIRGTDFDE  FAVKGNSLFP  EENLISGKGI420
TYSGLHMEDN  IYRYRLGTGM  TIKEKHKDYQ  KKFGFDCGFL  KYVVELAQEE  YAGYSLNNIG480
EKSEISVSYY  CKEAAVFEIL  QDERVLSVIE  CKPGEEQKST  GRLGLSQSRH  SILTVKVIRG540
SIELEAIHTY  RGEEIKE557

Predicted 3D structure by AlphaFold2 with pLDDT = 94.14 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MQENVVKGFL  DVDGTRIINE  EGKTVLLKGW  GLGNWLLCEG  YMWKSMGGER  FDRPRRIEEV60
IEELTGAEYS  KEFWMRFREN  YINEADIRRM  KELGYNSVRI  PINSRLFLKE  APGLNWVEEG120
FLLLDRVIDW  CEKYGLYAFI  DLHGAPGGQT  GANIDDCIDD  MPRLFIDEDC  FQKGIQLWKR180
LAERYSDRYI  VGGYDLLNEP  LRPKRHAKDK  EVEYLVPRLC  EFYEKATAEI  RKVDKKHLLS240
IEGHHWATAN  DVFYKKYDDK  MVIHFHRYAC  IPDKSCYRDY  LELREKWNVP  LWLGETGENT300
IEWFTAMYPL  AESLGIGYNI  WPWKKMDCTN  SPCSVPMPKD  WNLIIDYTNG  GMHPGYDKAK360
EILEEYLHNM  LLDNCDFKEE  VSAAVLREPG  SVIRGTDFDE  FAVKGNSLFP  EENLISGKGI420
TYSGLHMEDN  IYRYRLGTGM  TIKEKHKDYQ  KKFGFDCGFL  KYVVELAQEE  YAGYSLNNIG480
EKSEISVSYY  CKEAAVFEIL  QDERVLSVIE  CKPGEEQKST  GRLGLSQSRH  SILTVKVIRG540
SIELEAIHTY  RGEEIKE557

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_46(69-327)

MQENVVKGFL  DVDGTRIINE  EGKTVLLKGW  GLGNWLLCEG  YMWKSMGGER  FDRPRRIEEV60
IEELTGAEYS  KEFWMRFREN  YINEADIRRM  KELGYNSVRI  PINSRLFLKE  APGLNWVEEG120
FLLLDRVIDW  CEKYGLYAFI  DLHGAPGGQT  GANIDDCIDD  MPRLFIDEDC  FQKGIQLWKR180
LAERYSDRYI  VGGYDLLNEP  LRPKRHAKDK  EVEYLVPRLC  EFYEKATAEI  RKVDKKHLLS240
IEGHHWATAN  DVFYKKYDDK  MVIHFHRYAC  IPDKSCYRDY  LELREKWNVP  LWLGETGENT300
IEWFTAMYPL  AESLGIGYNI  WPWKKMDCTN  SPCSVPMPKD  WNLIIDYTNG  GMHPGYDKAK360
EILEEYLHNM  LLDNCDFKEE  VSAAVLREPG  SVIRGTDFDE  FAVKGNSLFP  EENLISGKGI420
TYSGLHMEDN  IYRYRLGTGM  TIKEKHKDYQ  KKFGFDCGFL  KYVVELAQEE  YAGYSLNNIG480
EKSEISVSYY  CKEAAVFEIL  QDERVLSVIE  CKPGEEQKST  GRLGLSQSRH  SILTVKVIRG540
SIELEAIHTY  RGEEIKE557

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help