CAZyme3D

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Entry ID

Information for CAZyme ID: BCJ98809.1

Basic Information

GenBank IDBCJ98809.1
FamilyGH5_54
Sequence Length1923
UniProt IDA0A7I8DK91(100,100)Download
Average pLDDT?81.70
CAZy50 ID1708
CAZy50 RepYes, BCJ98809.1
Structure ClusterSC_GH5_clus178
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1727145
KingdomBacteria
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusAnaerocolumna
SpeciesAnaerocolumna chitinilytica

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKKGIFSRNS  WKKWVAAALT  LTLIFNAGLP  GQGADNKVSA  AGSDKVIFTD  FESTDYTAGA60
YGNSITRDSV  NVYEGKQALQ  YVQSEGKKWD  NDIKVRSVSG  SAIDASGMTK  IVIHVKDTVG120
ANNFEVKLID  ENNNTSAKYT  AEKAVKDQWT  TLEVPLDQYS  GINKAAIKQI  AVWEWNDGAY180
YFDSIYFEDA  NNNKVMFQDF  EQSLYYNTNN  GTNKLTQADK  NNGSTSLIYN  QGNDSGGGEA240
IINPGKVIDA  TGKDYIVFWL  KDTNGSNNLK  LALTDADGNS  YDDWTDGNDA  LQKSLKDQWK300
EIAVPLSKYS  SHGVDLSKIT  QIKIYEWNTG  NYYIDDIYFT  SILPPAPPVS  DVSEGTYTES360
FQVSLTAPES  GGAIYYTTDE  TKPTESSSLY  TAPITINTST  LLKAVFIKNG  ESSRVLTLNY420
SVVASNIPKK  VMFEDFEGTP  VITNGTVTDA  EKYSGTKSAS  YILTASADPT  ESSSFYAEGA480
NTDTSLYNYL  VFWLKDTQGA  NTVKLGLKDK  NGNKTGLAWT  NTLTTEKGSS  IKNTWTEYAV540
KLSSISGIDK  IDRSAIKGIY  IGEWNSGTYY  IDDIYFTNNL  LPASPKSNYA  SGTYEKLEGV600
TLATTTAGCD  IYYTTDGSTP  TKASIKYQTP  LTFTENTIVK  AAAIRQSDDE  SSAVVTYTYH660
VKALPAGAVV  PFNDFDDGTG  KVIARTGAKV  TANSTDSYQG  KSITYEMSTL  SGSPTQTVRS720
ITVTPKNGAT  ADVRLSKYLV  FYVKDKQAYN  NTRMFIKDDF  GNEASAWTTC  STKYNEWNMY780
YVDLSSMDGY  ANLDLAFIKE  VTFGFYNTGT  YLIDEMYFTD  KLYTGLPGAE  TPALNPAAGE840
IQTSKAPGTY  DVFVPVELAA  ETGADIYYTT  DGTTPTTASK  KYTRAIYLKA  PAVIKAISVK900
NSISGNVFSF  EYNIKPGKPV  TIFGEPGTYT  GSVIVALRSS  EDNTPVYYTL  DGSEPTVSSI960
RYNSPFRIEE  TTTLKAIGYD  NGAASDTKTF  EYIIQGTEAG  VKAVKSSLPA  GTYGAARTMT1020
LTSGTVGAQI  YYTTNGSNPT  TSSQLYTGAV  TVSTDTTIKA  IAVLGSKVSG  ISEYQYTIKS1080
GPSNFLKADG  KKIRNNYGTG  EEVILRGTNA  GGWLVTENWQ  CPLDAKDMLT  MMNVFTERFG1140
KEKAAELIKQ  YQDHWWTSKD  FDYVKAEGIN  ILRLPITYFE  MLNSDGSLKT  TAFERLDWFI1200
NEAKKRDIYV  MIDMHGAVGS  QNGKDHSGDT  TIADIGDFYG  NEENISKTVT  LWKEIAKRYK1260
NEPMVCGYDL  LNEPSATKLV  QYDVYDRIYK  AIREVDKDHM  IFLQGIWNPT  DLPDPSLYGW1320
ENVVYQYHFY  QWSGLTDAKV  QSDFIKEKIK  MIKETTNYNV  PSFIGEFTFF  SNPDSWKQCM1380
DLIEAEGYGY  TTWTFKVADG  GEGSSWGLYT  GKSNPVLVNT  DSFDTIMNKW  STIDTTTGFT1440
RNTTFADVLK  PYFSKNIPLA  VPYSEGSGGN  PGGGDNSGNG  GNGNGGSNNG  SNQNNNNSSV1500
AVAVPTVSDI  QVKDGKAVIS  LSLSKAELQK  AAEGKEKLTL  SAALPENEIA  AQIKGGNDIS1560
IRLDLTPALS  ISNVVVDKVV  LSSNLLTQIA  AAQKSVDATI  VLKDAALNWH  FDGELLKASK1620
RPVTDINLMG  QISVAAITGS  AITQRGLVVS  FNHSGLLPST  AVITLSPSGS  LADSFFKDAG1680
LTVGSNAYVY  YHDQASGKLL  AIPNNKIMVA  SDGIRVPITH  CSDYVILAKE  PDKSILVSLL1740
DQINVSADKV  PVYVNGTMGN  TKLIKVTLPQ  TLVKTGSSKV  KDSGVDTVAI  TYASSNKSVA1800
IVDKNGKVTG  KKAGKATITV  TAKLSDGTSR  IVKVPVTVKN  AWVEVLEAPT  TIKSGKTSSF1860
RIALHGYKNS  DITWLTGKRG  IASVGINSGK  TTVKVTGTSA  GKDTLIILSK  GKKIKSISVT1920
VAK1923

Predicted 3D structure by AlphaFold2 with pLDDT = 81.70 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKKGIFSRNS  WKKWVAAALT  LTLIFNAGLP  GQGADNKVSA  AGSDKVIFTD  FESTDYTAGA60
YGNSITRDSV  NVYEGKQALQ  YVQSEGKKWD  NDIKVRSVSG  SAIDASGMTK  IVIHVKDTVG120
ANNFEVKLID  ENNNTSAKYT  AEKAVKDQWT  TLEVPLDQYS  GINKAAIKQI  AVWEWNDGAY180
YFDSIYFEDA  NNNKVMFQDF  EQSLYYNTNN  GTNKLTQADK  NNGSTSLIYN  QGNDSGGGEA240
IINPGKVIDA  TGKDYIVFWL  KDTNGSNNLK  LALTDADGNS  YDDWTDGNDA  LQKSLKDQWK300
EIAVPLSKYS  SHGVDLSKIT  QIKIYEWNTG  NYYIDDIYFT  SILPPAPPVS  DVSEGTYTES360
FQVSLTAPES  GGAIYYTTDE  TKPTESSSLY  TAPITINTST  LLKAVFIKNG  ESSRVLTLNY420
SVVASNIPKK  VMFEDFEGTP  VITNGTVTDA  EKYSGTKSAS  YILTASADPT  ESSSFYAEGA480
NTDTSLYNYL  VFWLKDTQGA  NTVKLGLKDK  NGNKTGLAWT  NTLTTEKGSS  IKNTWTEYAV540
KLSSISGIDK  IDRSAIKGIY  IGEWNSGTYY  IDDIYFTNNL  LPASPKSNYA  SGTYEKLEGV600
TLATTTAGCD  IYYTTDGSTP  TKASIKYQTP  LTFTENTIVK  AAAIRQSDDE  SSAVVTYTYH660
VKALPAGAVV  PFNDFDDGTG  KVIARTGAKV  TANSTDSYQG  KSITYEMSTL  SGSPTQTVRS720
ITVTPKNGAT  ADVRLSKYLV  FYVKDKQAYN  NTRMFIKDDF  GNEASAWTTC  STKYNEWNMY780
YVDLSSMDGY  ANLDLAFIKE  VTFGFYNTGT  YLIDEMYFTD  KLYTGLPGAE  TPALNPAAGE840
IQTSKAPGTY  DVFVPVELAA  ETGADIYYTT  DGTTPTTASK  KYTRAIYLKA  PAVIKAISVK900
NSISGNVFSF  EYNIKPGKPV  TIFGEPGTYT  GSVIVALRSS  EDNTPVYYTL  DGSEPTVSSI960
RYNSPFRIEE  TTTLKAIGYD  NGAASDTKTF  EYIIQGTEAG  VKAVKSSLPA  GTYGAARTMT1020
LTSGTVGAQI  YYTTNGSNPT  TSSQLYTGAV  TVSTDTTIKA  IAVLGSKVSG  ISEYQYTIKS1080
GPSNFLKADG  KKIRNNYGTG  EEVILRGTNA  GGWLVTENWQ  CPLDAKDMLT  MMNVFTERFG1140
KEKAAELIKQ  YQDHWWTSKD  FDYVKAEGIN  ILRLPITYFE  MLNSDGSLKT  TAFERLDWFI1200
NEAKKRDIYV  MIDMHGAVGS  QNGKDHSGDT  TIADIGDFYG  NEENISKTVT  LWKEIAKRYK1260
NEPMVCGYDL  LNEPSATKLV  QYDVYDRIYK  AIREVDKDHM  IFLQGIWNPT  DLPDPSLYGW1320
ENVVYQYHFY  QWSGLTDAKV  QSDFIKEKIK  MIKETTNYNV  PSFIGEFTFF  SNPDSWKQCM1380
DLIEAEGYGY  TTWTFKVADG  GEGSSWGLYT  GKSNPVLVNT  DSFDTIMNKW  STIDTTTGFT1440
RNTTFADVLK  PYFSKNIPLA  VPYSEGSGGN  PGGGDNSGNG  GNGNGGSNNG  SNQNNNNSSV1500
AVAVPTVSDI  QVKDGKAVIS  LSLSKAELQK  AAEGKEKLTL  SAALPENEIA  AQIKGGNDIS1560
IRLDLTPALS  ISNVVVDKVV  LSSNLLTQIA  AAQKSVDATI  VLKDAALNWH  FDGELLKASK1620
RPVTDINLMG  QISVAAITGS  AITQRGLVVS  FNHSGLLPST  AVITLSPSGS  LADSFFKDAG1680
LTVGSNAYVY  YHDQASGKLL  AIPNNKIMVA  SDGIRVPITH  CSDYVILAKE  PDKSILVSLL1740
DQINVSADKV  PVYVNGTMGN  TKLIKVTLPQ  TLVKTGSSKV  KDSGVDTVAI  TYASSNKSVA1800
IVDKNGKVTG  KKAGKATITV  TAKLSDGTSR  IVKVPVTVKN  AWVEVLEAPT  TIKSGKTSSF1860
RIALHGYKNS  DITWLTGKRG  IASVGINSGK  TTVKVTGTSA  GKDTLIILSK  GKKIKSISVT1920
VAK1923

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM23(206-339)+CBM8(473-574)+CBM56(1018-1083)+GH5_54(1135-1396)

MKKGIFSRNS  WKKWVAAALT  LTLIFNAGLP  GQGADNKVSA  AGSDKVIFTD  FESTDYTAGA60
YGNSITRDSV  NVYEGKQALQ  YVQSEGKKWD  NDIKVRSVSG  SAIDASGMTK  IVIHVKDTVG120
ANNFEVKLID  ENNNTSAKYT  AEKAVKDQWT  TLEVPLDQYS  GINKAAIKQI  AVWEWNDGAY180
YFDSIYFEDA  NNNKVMFQDF  EQSLYYNTNN  GTNKLTQADK  NNGSTSLIYN  QGNDSGGGEA240
IINPGKVIDA  TGKDYIVFWL  KDTNGSNNLK  LALTDADGNS  YDDWTDGNDA  LQKSLKDQWK300
EIAVPLSKYS  SHGVDLSKIT  QIKIYEWNTG  NYYIDDIYFT  SILPPAPPVS  DVSEGTYTES360
FQVSLTAPES  GGAIYYTTDE  TKPTESSSLY  TAPITINTST  LLKAVFIKNG  ESSRVLTLNY420
SVVASNIPKK  VMFEDFEGTP  VITNGTVTDA  EKYSGTKSAS  YILTASADPT  ESSSFYAEGA480
NTDTSLYNYL  VFWLKDTQGA  NTVKLGLKDK  NGNKTGLAWT  NTLTTEKGSS  IKNTWTEYAV540
KLSSISGIDK  IDRSAIKGIY  IGEWNSGTYY  IDDIYFTNNL  LPASPKSNYA  SGTYEKLEGV600
TLATTTAGCD  IYYTTDGSTP  TKASIKYQTP  LTFTENTIVK  AAAIRQSDDE  SSAVVTYTYH660
VKALPAGAVV  PFNDFDDGTG  KVIARTGAKV  TANSTDSYQG  KSITYEMSTL  SGSPTQTVRS720
ITVTPKNGAT  ADVRLSKYLV  FYVKDKQAYN  NTRMFIKDDF  GNEASAWTTC  STKYNEWNMY780
YVDLSSMDGY  ANLDLAFIKE  VTFGFYNTGT  YLIDEMYFTD  KLYTGLPGAE  TPALNPAAGE840
IQTSKAPGTY  DVFVPVELAA  ETGADIYYTT  DGTTPTTASK  KYTRAIYLKA  PAVIKAISVK900
NSISGNVFSF  EYNIKPGKPV  TIFGEPGTYT  GSVIVALRSS  EDNTPVYYTL  DGSEPTVSSI960
RYNSPFRIEE  TTTLKAIGYD  NGAASDTKTF  EYIIQGTEAG  VKAVKSSLPA  GTYGAARTMT1020
LTSGTVGAQI  YYTTNGSNPT  TSSQLYTGAV  TVSTDTTIKA  IAVLGSKVSG  ISEYQYTIKS1080
GPSNFLKADG  KKIRNNYGTG  EEVILRGTNA  GGWLVTENWQ  CPLDAKDMLT  MMNVFTERFG1140
KEKAAELIKQ  YQDHWWTSKD  FDYVKAEGIN  ILRLPITYFE  MLNSDGSLKT  TAFERLDWFI1200
NEAKKRDIYV  MIDMHGAVGS  QNGKDHSGDT  TIADIGDFYG  NEENISKTVT  LWKEIAKRYK1260
NEPMVCGYDL  LNEPSATKLV  QYDVYDRIYK  AIREVDKDHM  IFLQGIWNPT  DLPDPSLYGW1320
ENVVYQYHFY  QWSGLTDAKV  QSDFIKEKIK  MIKETTNYNV  PSFIGEFTFF  SNPDSWKQCM1380
DLIEAEGYGY  TTWTFKVADG  GEGSSWGLYT  GKSNPVLVNT  DSFDTIMNKW  STIDTTTGFT1440
RNTTFADVLK  PYFSKNIPLA  VPYSEGSGGN  PGGGDNSGNG  GNGNGGSNNG  SNQNNNNSSV1500
AVAVPTVSDI  QVKDGKAVIS  LSLSKAELQK  AAEGKEKLTL  SAALPENEIA  AQIKGGNDIS1560
IRLDLTPALS  ISNVVVDKVV  LSSNLLTQIA  AAQKSVDATI  VLKDAALNWH  FDGELLKASK1620
RPVTDINLMG  QISVAAITGS  AITQRGLVVS  FNHSGLLPST  AVITLSPSGS  LADSFFKDAG1680
LTVGSNAYVY  YHDQASGKLL  AIPNNKIMVA  SDGIRVPITH  CSDYVILAKE  PDKSILVSLL1740
DQINVSADKV  PVYVNGTMGN  TKLIKVTLPQ  TLVKTGSSKV  KDSGVDTVAI  TYASSNKSVA1800
IVDKNGKVTG  KKAGKATITV  TAKLSDGTSR  IVKVPVTVKN  AWVEVLEAPT  TIKSGKTSSF1860
RIALHGYKNS  DITWLTGKRG  IASVGINSGK  TTVKVTGTSA  GKDTLIILSK  GKKIKSISVT1920
VAK1923

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help