CAZyme3D

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Entry ID

Information for CAZyme ID: BCJ54010.1

Basic Information

GenBank IDBCJ54010.1
FamilyGT101
Sequence Length322
UniProt IDA0A2T0S4L0(100,100)Download
Average pLDDT?91.97
CAZy50 ID146027
CAZy50 RepYes, BCJ54010.1
Structure ClusterSC_GT101_clus12
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2721544
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMicromonosporales
FamilyMicromonosporaceae
GenusActinoplanes
SpeciesActinoplanes sp. NBRC 14428

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSEPTRTSFL  HRARRRLAGL  PAVEGPSPRE  IERRKAEKKR  AEDLRKHQQS  TTKLLSDIRW60
ELREQRKYME  GFRSLASRDT  YAEIREFTDA  CQLGFEETVR  RVGQERISLA  RFGDGELKTM120
LRPEFNLRFQ  PWSAGLAGDL  RQVLRMDGYD  RDKLMIAFPY  TFRNVHWTGV  WLDIWPELEP180
LLDRSLTWGM  AHVSRPQYFH  HTGRHGVQLW  RDVWEAKEVV  IVTGENSRFV  LEPALFDNVK240
SVDFIYSTPI  DAYSDLPRLM  PLLEAVDPDK  LFLIALGPAG  TLVAAKLAQA  GRWAIDIGHI300
SESYANVFEG  GAWPEDTAVV  SK322

Predicted 3D structure by AlphaFold2 with pLDDT = 91.97 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MSEPTRTSFL  HRARRRLAGL  PAVEGPSPRE  IERRKAEKKR  AEDLRKHQQS  TTKLLSDIRW60
ELREQRKYME  GFRSLASRDT  YAEIREFTDA  CQLGFEETVR  RVGQERISLA  RFGDGELKTM120
LRPEFNLRFQ  PWSAGLAGDL  RQVLRMDGYD  RDKLMIAFPY  TFRNVHWTGV  WLDIWPELEP180
LLDRSLTWGM  AHVSRPQYFH  HTGRHGVQLW  RDVWEAKEVV  IVTGENSRFV  LEPALFDNVK240
SVDFIYSTPI  DAYSDLPRLM  PLLEAVDPDK  LFLIALGPAG  TLVAAKLAQA  GRWAIDIGHI300
SESYANVFEG  GAWPEDTAVV  SK322

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT101(110-306)

MSEPTRTSFL  HRARRRLAGL  PAVEGPSPRE  IERRKAEKKR  AEDLRKHQQS  TTKLLSDIRW60
ELREQRKYME  GFRSLASRDT  YAEIREFTDA  CQLGFEETVR  RVGQERISLA  RFGDGELKTM120
LRPEFNLRFQ  PWSAGLAGDL  RQVLRMDGYD  RDKLMIAFPY  TFRNVHWTGV  WLDIWPELEP180
LLDRSLTWGM  AHVSRPQYFH  HTGRHGVQLW  RDVWEAKEVV  IVTGENSRFV  LEPALFDNVK240
SVDFIYSTPI  DAYSDLPRLM  PLLEAVDPDK  LFLIALGPAG  TLVAAKLAQA  GRWAIDIGHI300
SESYANVFEG  GAWPEDTAVV  SK322

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help