CAZyme3D

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Entry ID

Information for CAZyme ID: BCG53320.1

Basic Information

GenBank IDBCG53320.1
FamilyGH163
Sequence Length748
UniProt IDA0A6S6M6G4(100,100)Download
Average pLDDT?92.04
CAZy50 ID32981
CAZy50 RepYes, BCG53320.1
Structure ClusterSC_GH163_clus14
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID626932
KingdomBacteria
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyRikenellaceae
GenusAlistipes
SpeciesAlistipes indistinctus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKTKLSLIGV  LASLLLGACS  KSIVLNDYVI  VKPAAATATE  AKAASELQKY  LFEISGAELP60
VVSDTAPPTD  REILIGITNR  LRDDSLARFG  EDGFVIRTDG  KRLAIYGGPR  HGALYGVYTL120
LEEYFGCRKY  TAEPVVVPHT  AKLRIGVPLD  DEQIPQITSR  YTYTMPYDSL  YLDWHKLNHE180
LDCRISEFGL  FVHTFNTLLP  PEKYYAQHPE  YYAMVKGRRV  ATQPCLSNPQ  VLEIVCDELS240
RRIAANPEAK  YWSVSANDNY  GYCTCPECAK  IDAEEESPAG  SVVRFANKVA  ARFPDKTIST300
LGYLYSRKAP  KTKPAPNVNI  MFCSIECDRH  MPIADDPGSA  DFRRDMEAWA  ALTDNIFVWD360
YCGSFKELQM  PTPGFGVMQS  NIQYFVRNGV  KIFFEQCSGP  MGSEFHQLRG  YLAAKLLWDP420
ELDFDATMND  FLNGYYGAAG  PIIREYIDLL  RQNREASGEP  FGIFNYTTDF  AGSWLAPDKL480
RGYLAILDRA  EAAVAGDTTL  LRRVHYTRQP  VQFAQLELSR  TDPYGPEGYL  EEVGGRWQVK540
REWLDKLHDF  VTSCKLNGVK  NVCEWHNEPD  SYLRQMLRSA  QVEQVDNLAF  GKPVRASVPV600
AENRNPQGQG  TQLLTDGVRG  TEIYRSQWLG  YYQPEVDFYI  DLDTVQPVYH  VDASFLQILW660
ESAFLPESVE  VYTSTDGKRY  QTAGRQTNTV  LREPFFGIKQ  FDCDFAPRPV  RYVRVRVKAM720
ELCPTWHYYA  GDDALFFIDE  IVVRKADY748

Predicted 3D structure by AlphaFold2 with pLDDT = 92.04 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKTKLSLIGV  LASLLLGACS  KSIVLNDYVI  VKPAAATATE  AKAASELQKY  LFEISGAELP60
VVSDTAPPTD  REILIGITNR  LRDDSLARFG  EDGFVIRTDG  KRLAIYGGPR  HGALYGVYTL120
LEEYFGCRKY  TAEPVVVPHT  AKLRIGVPLD  DEQIPQITSR  YTYTMPYDSL  YLDWHKLNHE180
LDCRISEFGL  FVHTFNTLLP  PEKYYAQHPE  YYAMVKGRRV  ATQPCLSNPQ  VLEIVCDELS240
RRIAANPEAK  YWSVSANDNY  GYCTCPECAK  IDAEEESPAG  SVVRFANKVA  ARFPDKTIST300
LGYLYSRKAP  KTKPAPNVNI  MFCSIECDRH  MPIADDPGSA  DFRRDMEAWA  ALTDNIFVWD360
YCGSFKELQM  PTPGFGVMQS  NIQYFVRNGV  KIFFEQCSGP  MGSEFHQLRG  YLAAKLLWDP420
ELDFDATMND  FLNGYYGAAG  PIIREYIDLL  RQNREASGEP  FGIFNYTTDF  AGSWLAPDKL480
RGYLAILDRA  EAAVAGDTTL  LRRVHYTRQP  VQFAQLELSR  TDPYGPEGYL  EEVGGRWQVK540
REWLDKLHDF  VTSCKLNGVK  NVCEWHNEPD  SYLRQMLRSA  QVEQVDNLAF  GKPVRASVPV600
AENRNPQGQG  TQLLTDGVRG  TEIYRSQWLG  YYQPEVDFYI  DLDTVQPVYH  VDASFLQILW660
ESAFLPESVE  VYTSTDGKRY  QTAGRQTNTV  LREPFFGIKQ  FDCDFAPRPV  RYVRVRVKAM720
ELCPTWHYYA  GDDALFFIDE  IVVRKADY748

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH163(198-447)+CBM32(604-719)

MKTKLSLIGV  LASLLLGACS  KSIVLNDYVI  VKPAAATATE  AKAASELQKY  LFEISGAELP60
VVSDTAPPTD  REILIGITNR  LRDDSLARFG  EDGFVIRTDG  KRLAIYGGPR  HGALYGVYTL120
LEEYFGCRKY  TAEPVVVPHT  AKLRIGVPLD  DEQIPQITSR  YTYTMPYDSL  YLDWHKLNHE180
LDCRISEFGL  FVHTFNTLLP  PEKYYAQHPE  YYAMVKGRRV  ATQPCLSNPQ  VLEIVCDELS240
RRIAANPEAK  YWSVSANDNY  GYCTCPECAK  IDAEEESPAG  SVVRFANKVA  ARFPDKTIST300
LGYLYSRKAP  KTKPAPNVNI  MFCSIECDRH  MPIADDPGSA  DFRRDMEAWA  ALTDNIFVWD360
YCGSFKELQM  PTPGFGVMQS  NIQYFVRNGV  KIFFEQCSGP  MGSEFHQLRG  YLAAKLLWDP420
ELDFDATMND  FLNGYYGAAG  PIIREYIDLL  RQNREASGEP  FGIFNYTTDF  AGSWLAPDKL480
RGYLAILDRA  EAAVAGDTTL  LRRVHYTRQP  VQFAQLELSR  TDPYGPEGYL  EEVGGRWQVK540
REWLDKLHDF  VTSCKLNGVK  NVCEWHNEPD  SYLRQMLRSA  QVEQVDNLAF  GKPVRASVPV600
AENRNPQGQG  TQLLTDGVRG  TEIYRSQWLG  YYQPEVDFYI  DLDTVQPVYH  VDASFLQILW660
ESAFLPESVE  VYTSTDGKRY  QTAGRQTNTV  LREPFFGIKQ  FDCDFAPRPV  RYVRVRVKAM720
ELCPTWHYYA  GDDALFFIDE  IVVRKADY748

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help