CAZyme3D

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Entry ID

Information for CAZyme ID: BBZ09451.1

Basic Information

GenBank IDBBZ09451.1
FamilyGH178
Sequence Length356
UniProt IDA0A1X1TJ54(100,100)Download
Average pLDDT?94.09
CAZy50 ID87582
CAZy50 RepNo, ADP78098.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID126673
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyMycobacteriaceae
GenusMycolicibacterium
SpeciesMycolicibacterium doricum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLAADLPGIP  GIFSPAQCRQ  TAESIAAEQE  PSGAIPWFTG  GHTDPWDHVE  SAMALTVAGL60
LEPARAAYEW  CRVTQRADGS  WPIQFRKGVV  EDANSDSNFC  AYIAAGVWHH  LLITADHSFA120
ETMWPVVARA  MDFVLGLQRP  NGEISWAQSK  AGPIPEALLT  GCASIHHSIR  CALALADYMG180
EPQPEWEVAV  GRLGHAIVAH  PESFVPKDRH  AMEWYYPVLC  GALRGPAARA  RIGERWDDFV240
VPGLGIRCVD  DRPWVTGAET  CELVMALDAI  GDRARAHQQF  AAMHHLREDD  GSYWTGLVFA300
DGKRWPEERT  TWTGAAVILA  ADALTGATPG  SGIFRGADLP  RGLDDEFDCA  CAVSDR356

Predicted 3D structure by AlphaFold2 with pLDDT = 94.09 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) :

MLAADLPGIP  GIFSPAQCRQ  TAESIAAEQE  PSGAIPWFTG  GHTDPWDHVE  SAMALTVAGL60
LEPARAAYEW  CRVTQRADGS  WPIQFRKGVV  EDANSDSNFC  AYIAAGVWHH  LLITADHSFA120
ETMWPVVARA  MDFVLGLQRP  NGEISWAQSK  AGPIPEALLT  GCASIHHSIR  CALALADYMG180
EPQPEWEVAV  GRLGHAIVAH  PESFVPKDRH  AMEWYYPVLC  GALRGPAARA  RIGERWDDFV240
VPGLGIRCVD  DRPWVTGAET  CELVMALDAI  GDRARAHQQF  AAMHHLREDD  GSYWTGLVFA300
DGKRWPEERT  TWTGAAVILA  ADALTGATPG  SGIFRGADLP  RGLDDEFDCA  CAVSDR356

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help