CAZyme3D

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Entry ID

Information for CAZyme ID: BBX01164.1

Basic Information

GenBank IDBBX01164.1
FamilyGH23
Sequence Length514
UniProt IDA0A1X0HBA0(97.9,92.6)Download
Average pLDDT?62.03
CAZy50 ID66010
CAZy50 RepYes, BBX01164.1
Structure ClusterSC_GH23_clus281
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID39691
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyMycobacteriaceae
GenusMycolicibacterium
SpeciesMycolicibacterium moriokaense

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MHIGGGAALK  AARRLTGRVA  HSATGAVSRV  RAVNVRDALR  PSRVRGALTP  ARARVASGFA60
VIAPIILVGA  VGASVQPNSP  VRNAAVTNLA  AVESSSSTSP  GPTVVAVAKS  PSAFHIAASS120
SSSPQPAAVV  NAPGTLRIPA  MALAAYRNAE  RMMAVAAPEC  GVSWNLLAGI  GRIESMHANG180
GATDSRGTAV  RPIYGPALDG  SLPGNEVIVQ  SRTADRVTYA  RAMGPMQFLP  GTWARYASDG240
DGDGKAEVQN  LFDASLATAR  YLCSGGMNLR  DQSHVMAAIL  RYNNSVAYAR  NVLGWAAAYA300
TGVVPVDLPP  ITGSVPVLED  SGDMHLDGYQ  GLGPGLPMNA  LGLPANDPLA  LMPTLTRSDV360
ASQLPGFVPG  QRLGPLPGPA  PGPLAVAPTP  EPQPQQWLPP  WLQPPPKKTP  ECAVFCIKDN420
PAPLQSAIGA  PPVAQPMVPP  GTAPPPGPLT  PVGTPPGPAP  LGTPPGPMPM  APPPGPAPLA480
PAPGPAQAPL  GTPPGPSPAP  AQAPLPGPPP  PPAG514

Predicted 3D structure by AlphaFold2 with pLDDT = 62.03 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MHIGGGAALK  AARRLTGRVA  HSATGAVSRV  RAVNVRDALR  PSRVRGALTP  ARARVASGFA60
VIAPIILVGA  VGASVQPNSP  VRNAAVTNLA  AVESSSSTSP  GPTVVAVAKS  PSAFHIAASS120
SSSPQPAAVV  NAPGTLRIPA  MALAAYRNAE  RMMAVAAPEC  GVSWNLLAGI  GRIESMHANG180
GATDSRGTAV  RPIYGPALDG  SLPGNEVIVQ  SRTADRVTYA  RAMGPMQFLP  GTWARYASDG240
DGDGKAEVQN  LFDASLATAR  YLCSGGMNLR  DQSHVMAAIL  RYNNSVAYAR  NVLGWAAAYA300
TGVVPVDLPP  ITGSVPVLED  SGDMHLDGYQ  GLGPGLPMNA  LGLPANDPLA  LMPTLTRSDV360
ASQLPGFVPG  QRLGPLPGPA  PGPLAVAPTP  EPQPQQWLPP  WLQPPPKKTP  ECAVFCIKDN420
PAPLQSAIGA  PPVAQPMVPP  GTAPPPGPLT  PVGTPPGPAP  LGTPPGPMPM  APPPGPAPLA480
PAPGPAQAPL  GTPPGPSPAP  AQAPLPGPPP  PPAG514

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH23(162-300)

MRPSRVRGAL  TPARARVASG  FAVIAPIILV  GAVGASVQPN  SPVRNAAVTN  LAAVESSSST60
SPGPTVVAVA  KSPSAFHIAA  SSSSSPQPAA  VVNAPGTLRI  PAMALAAYRN  AERMMAVAAP120
ECGVSWNLLA  GIGRIESMHA  NGGATDSRGT  AVRPIYGPAL  DGSLPGNEVI  VQSRTADRVT180
YARAMGPMQF  LPGTWARYAS  DGDGDGKAEV  QNLFDASLAT  ARYLCSGGMN  LRDQSHVMAA240
ILRYNNSVAY  ARNVLGWAAA  YATGVVPVDL  PPITGSVPVL  EDSGDMHLDG  YQGLGPGLPM300
NALGLPANDP  LALMPTLTRS  DVASQLPGFV  PGQRLGPLPG  PAPGPLAVAP  TPEPQPQQWL360
PPWLQPPPKK  TPECAVFCIK  DNPAPLQSAI  GAPPVAQPMV  PPGTAPPPGP  LTPVGTPPGP420
APLGTPPGPM  PMAPPPGPAP  LAPAPGPAQA  PLGTPPGPSP  APAQAPLPGP  PPPPAG476

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help