CAZyme3D

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Entry ID

Information for CAZyme ID: BBP74314.1

Basic Information

GenBank IDBBP74314.1
FamilyAA10, CBM73
Sequence Length518
UniProt IDA0A7Y7Y0I0(99.6,89.8)Download
Average pLDDT?91.49
CAZy50 ID65177
CAZy50 RepYes, BBP74314.1
Structure ClusterSC_AA10_clus21, SC_CBM73_clus11
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2678260
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. Ost2

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNMMFVIIKS  GIDKEAACFA  QGECVASSNM  TLELDCMIKR  RSSSVSGGAS  SLAMLAALIA60
SQQVAAHGYL  SDPPSRAYAC  QQGLNKDCGG  AQYEPQSVGE  TFKGFPAGAG  GNPLQGPVDG120
RIASGGAANF  SALDAQSATR  WHLTEIKDRE  IQFAWQYTAA  HPATRHEYFI  TRSGWNPNLP180
LSRASFDGTP  FCTVDGGNAL  PVSGARHACV  IPPDKSGQHV  ILGVWTVGDT  DAAFYNVADV240
NILAEAVAPD  GWNTVGHITP  APAALLVGDA  VKARAFGADG  EINERRVGIS  IDTAEEGRPE300
NWSFKLAEQI  NRTQELVRAG  VRDEDGNIHP  IKGANKVFAK  AESGVRRYEL  QMELKEDADA360
DLRISAISND  YALDKGRVSL  PVPILGNRAM  NVEVTVFDAG  NKPVGSVTQQ  VEAGSTWLNV420
DVRSAPGTHQ  LKLVGTTVDG  RTTRQDLVSI  ELGGEGSDQE  YDAVYPQGIA  DYKPGTTVLQ480
GDKVYECKPF  PAGDWCKINS  HHYVPGHGSN  WQDAWIAR518

Predicted 3D structure by AlphaFold2 with pLDDT = 91.49 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MNMMFVIIKS  GIDKEAACFA  QGECVASSNM  TLELDCMIKR  RSSSVSGGAS  SLAMLAALIA60
SQQVAAHGYL  SDPPSRAYAC  QQGLNKDCGG  AQYEPQSVGE  TFKGFPAGAG  GNPLQGPVDG120
RIASGGAANF  SALDAQSATR  WHLTEIKDRE  IQFAWQYTAA  HPATRHEYFI  TRSGWNPNLP180
LSRASFDGTP  FCTVDGGNAL  PVSGARHACV  IPPDKSGQHV  ILGVWTVGDT  DAAFYNVADV240
NILAEAVAPD  GWNTVGHITP  APAALLVGDA  VKARAFGADG  EINERRVGIS  IDTAEEGRPE300
NWSFKLAEQI  NRTQELVRAG  VRDEDGNIHP  IKGANKVFAK  AESGVRRYEL  QMELKEDADA360
DLRISAISND  YALDKGRVSL  PVPILGNRAM  NVEVTVFDAG  NKPVGSVTQQ  VEAGSTWLNV420
DVRSAPGTHQ  LKLVGTTVDG  RTTRQDLVSI  ELGGEGSDQE  YDAVYPQGIA  DYKPGTTVLQ480
GDKVYECKPF  PAGDWCKINS  HHYVPGHGSN  WQDAWIAR518

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : AA10(67-241)+CBM73(465-515)

MLAALIASQQ  VAAHGYLSDP  PSRAYACQQG  LNKDCGGAQY  EPQSVGETFK  GFPAGAGGNP60
LQGPVDGRIA  SGGAANFSAL  DAQSATRWHL  TEIKDRDIQF  AWQYTAAHPA  TRHEYFITRS120
GWNPNLPLSR  ASFDGTPFCT  VDGGNALPVS  GARHACVIPP  DKSGQHVILG  VWTVGDTDAA180
FYNVADVNIL  AEAVAPDGWN  TVGHITPAPA  ALLVGDAVKA  RAFGADGEIN  ERRVGISIDT240
AEEGRPENWS  FKLAEQINRT  QELVRAGVRE  EDGNIHPIKG  ANKVFAKAES  GVRRYELQME300
LKEDADADLR  ISAISNDYAL  DKGRVSLPVP  ILGNRAMNVE  VTVFDAGNKP  VGSVTQQVEA360
GSTWLNVDVR  SAPGTHQLKL  VGTTVDGRTT  RQDLVSIELG  GEGSDQEYDA  VYPQGIADYK420
PGTTVLQGDK  VYECKPFPAG  DWCKINSHHY  VPGHGSNWQD  AWIAR465

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help