CAZyme3D

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Entry ID

Information for CAZyme ID: BBO88340.1

Basic Information

GenBank IDBBO88340.1
FamilyGT0
Sequence Length340
UniProt IDA0A5K8A8F6(100,100)Download
Average pLDDT?94.85
CAZy50 ID137012
CAZy50 RepYes, BBO88340.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2752305
KingdomBacteria
PhylumThermodesulfobacteriota
ClassDesulfobacteria
OrderDesulfobacterales
FamilyDesulfosarcinaceae
GenusDesulfosarcina
SpeciesDesulfosarcina ovata

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKIAYMTINS  ANYIPRAMVL  LDSIRKNGSK  CDLHMVLAEN  DETCNRVTPI  DGITLHRASS60
LEIPTLFDMS  FYYNITEFNT  ALKPFAILKL  MQLGYDAVIY  FDPDIEIFSD  TIELEEMTAL120
HDLLLTPHIT  KPRKEDGFFP  PVRLCIHAGQ  FNLGFIAIRP  TLQATEFLHW  WADKLVEGCI180
MEPDYSYFVD  QLWASAGPSF  VDDTKIVRSD  AWNMAYWNIG  QRKLWCREKQ  WMTDDGPLLF240
FHFSGYDLED  PHRLSYFTER  HANVPPNSEL  GSLLAGYRGT  VAAKTILYPY  GNIPYSAGKY300
RDGSIISPVA  RRRYLQMTPS  ERVTLGDPFV  RPDKLETATN  340

Predicted 3D structure by AlphaFold2 with pLDDT = 94.85 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKIAYMTINS  ANYIPRAMVL  LDSIRKNGSK  CDLHMVLAEN  DETCNRVTPI  DGITLHRASS60
LEIPTLFDMS  FYYNITEFNT  ALKPFAILKL  MQLGYDAVIY  FDPDIEIFSD  TIELEEMTAL120
HDLLLTPHIT  KPRKEDGFFP  PVRLCIHAGQ  FNLGFIAIRP  TLQATEFLHW  WADKLVEGCI180
MEPDYSYFVD  QLWASAGPSF  VDDTKIVRSD  AWNMAYWNIG  QRKLWCREKQ  WMTDDGPLLF240
FHFSGYDLED  PHRLSYFTER  HANVPPNSEL  GSLLAGYRGT  VAAKTILYPY  GNIPYSAGKY300
RDGSIISPVA  RRRYLQMTPS  ERVTLGDPFV  RPDKLETATN  340

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT8(10-160)

MKIAYMTINS  ANYIPRAMVL  LDSIRKNGSK  CDLHMVLAEN  DETCNRVTPI  DGITLHRASS60
LEIPTLFDMS  FYYNITEFNT  ALKPFAILKL  MQLGYDAVIY  FDPDIEIFSD  TIELEEMTAL120
HDLLLTPHIT  KPRKEDGFFP  PVRLCIHAGQ  FNLGFIAIRP  TLQATEFLHW  WADKLVEGCI180
MEPDYSYFVD  QLWASAGPSF  VDDTKIVRSD  AWNMAYWNIG  QRKLWCREKQ  WMTDDGPLLF240
FHFSGYDLED  PHRLSYFTER  HANVPPNSEL  GSLLAGYRGT  VAAKTILYPY  GNIPYSAGKY300
RDGSIISPVA  RRRYLQMTPS  ERVTLGDPFV  RPDKLETATN  340

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help