CAZyme3D

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Entry ID

Information for CAZyme ID: BBO86913.1

Basic Information

GenBank IDBBO86913.1
FamilyGT4
Sequence Length395
UniProt IDA0A5K8A2X8(100,100)Download
Average pLDDT?93.13
CAZy50 ID101417
CAZy50 RepYes, BBO86913.1
Structure ClusterSC_GT4_clus185
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2752305
KingdomBacteria
PhylumThermodesulfobacteriota
ClassDesulfobacteria
OrderDesulfobacterales
FamilyDesulfosarcinaceae
GenusDesulfosarcina
SpeciesDesulfosarcina ovata

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNICLVNHDF  IPVRGSGQTV  YAEKIARGLA  DGNNVTVITA  RPPGLSGIEY  IDNIRVVRLP60
VPHHDPSQWI  AFGYIAGQFI  KRQAGRKNFD  IIHFLDGHLG  YAAPKGFVAT  LHQSFNQRLK120
GKKGIPYHSS  LWNLIQRYPY  YKVSKILETL  ALGKAEACLA  ISHATRNEFI  QNYRVDPKRI180
DVVYSGIDTD  FFKPVDAGRQ  RKALGLTNEK  VLLYVGFSTP  RKGLEDLAAA  LRRLKTDNVK240
LVLAGKWEKG  YRQSFLHRLG  RNVDKVIEAG  YVDDAQMPAL  YSLADIFVLP  SLLEGFGFPL300
VESMACGTPV  ISTNAGAIPE  VVGNCGLVIP  PQNPGILAEK  IDLLLSDESL  RNSLKKRSRD360
WVLYNFSQAV  MMRQTFSFYE  RVMAQKKRTA  RHFAL395

Predicted 3D structure by AlphaFold2 with pLDDT = 93.13 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MNICLVNHDF  IPVRGSGQTV  YAEKIARGLA  DGNNVTVITA  RPPGLSGIEY  IDNIRVVRLP60
VPHHDPSQWI  AFGYIAGQFI  KRQAGRKNFD  IIHFLDGHLG  YAAPKGFVAT  LHQSFNQRLK120
GKKGIPYHSS  LWNLIQRYPY  YKVSKILETL  ALGKAEACLA  ISHATRNEFI  QNYRVDPKRI180
DVVYSGIDTD  FFKPVDAGRQ  RKALGLTNEK  VLLYVGFSTP  RKGLEDLAAA  LRRLKTDNVK240
LVLAGKWEKG  YRQSFLHRLG  RNVDKVIEAG  YVDDAQMPAL  YSLADIFVLP  SLLEGFGFPL300
VESMACGTPV  ISTNAGAIPE  VVGNCGLVIP  PQNPGILAEK  IDLLLSDESL  RNSLKKRSRD360
WVLYNFSQAV  MMRQTFSFYE  RVMAQKKRTA  RHFAL395

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT4(207-354)

MNICLVNHDF  IPVRGSGQTV  YAEKIARGLA  DGNNVTVITA  RPPGLSGIEY  IDNIRVVRLP60
VPHHDPSQWI  AFGYIAGQFI  KRQAGRKNFD  IIHFLDGHLG  YAAPKGFVAT  LHQSFNQRLK120
GKKGIPYHSS  LWNLIQRYPY  YKVSKILETL  ALGKAEACLA  ISHATRNEFI  QNYRVDPKRI180
DVVYSGIDTD  FFKPVDAGRQ  RKALGLTNEK  VLLYVGFSTP  RKGLEDLAAA  LRRLKTDNVK240
LVLAGKWEKG  YRQSFLHRLG  RNVDKVIEAG  YVDDAQMPAL  YSLADIFVLP  SLLEGFGFPL300
VESMACGTPV  ISTNAGAIPE  VVGNCGLVIP  PQNPGILAEK  IDLLLSDESL  RNSLKKRSRD360
WVLYNFSQAV  MMRQTFSFYE  RVMAQKKRTA  RHFAL395

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help