CAZyme3D

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Entry ID

Information for CAZyme ID: BBO79785.1

Basic Information

GenBank IDBBO79785.1
FamilyGT2, GT74
Sequence Length2652
UniProt IDA0A5K7ZHP3(100,100)Download
Average pLDDT?74.89
CAZy50 ID587
CAZy50 RepYes, BBO79785.1
Structure ClusterSC_GT2_clus421, SC_GT74_clus3
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID885957
KingdomBacteria
PhylumThermodesulfobacteriota
ClassDesulfobacteria
OrderDesulfobacterales
FamilyDesulfosarcinaceae
GenusDesulfosarcina
SpeciesDesulfosarcina ovata

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MINTYRRIDI  MAKYIYAQQR  LLNVESQWYK  DLYLDHINVL  NGFFEPDGSG  KNTSNKFINR60
YNNLLDEIHK  NGFDEEKSLI  PVGKNNLILD  GAHRIAACLL  YNFPVTCLFT  DTLAWEYNPI120
FFKFYEKHVK  GGLDEDWIDA  MVLQYCRLKR  NIYVASVFPS  AEGNDDVVVD  LLSKQAQIIY180
KKDIEIRGYG  QQLLIRQMYS  GEQWIGGVEN  KYLGARQKAY  FCFSKPGPLR  ILFLETDNKR240
ALSDAKEKIR  KIFNVGKHSI  HINDYHEETI  RLSEIYLNKN  SISFLNLANS  RIFPNFDKLF300
KVYKKWIGNN  EDKEKYCIDG  SSVMAVYGIR  EAVDIDFIVK  GIYNHHPIHR  LINCHNEESR360
YYPVKIDDII  FNPKNHFYFD  GVKFSSLNIV  QSMKINRNEK  KDRNDVELIE  KLLSKKKTYY420
LNKHQQIDEL  PTITKKIQKS  PKKIINCVYS  HTLFNGYCTK  KDDIFVIWSK  KPIKGSSIYY480
FQDAFSFHNI  NRGIKVLGMH  EPITVLPQQY  SEMVWKHFDF  VFTTLDDLVA  GNSKFVKIFH540
PAFDAPNSMD  SVKSVKMKYC  IPSQTKKIAI  CMIAGNKESQ  IEGELYSKRL  HIAKWFQQYS600
TIPFDVYGRP  PFHQLDNYCG  ILPTDDEKYS  KLSSYRYSLC  FENIYHSKWS  KGYLTEKILH660
CLMCGTVPIY  LGCSNIENYI  PRNCFIDFRD  FSDLDALDSF  LGETNDDQYQ  KYIVNIRKWI720
EAGNLDKFSM  YHIYDKLASI  AFPDTNMLQF  KQLPWKETPI  SKEFNNNQLE  TFGTKRWFWK780
DLSKITCSLL  PEMKDIVETR  KDFQNKNKRN  PIVNVIFSKN  RALQLNGTIQ  SFLLHCKDAQ840
NIDIKILYTT  TSNRHEEQYS  KLKKYYPEIQ  FIKENNFKKD  LENILSEYLY  VMFNVDDNIY900
IRDFSAFQII  NAFNCHEDIL  GCTLRLGQNT  IIKLHPVHKP  LQIPKFKNFN  DNLRVYNWTT960
LKPEGFGYPC  ELQSAVYRVS  DIGNIVKQFP  FRNPNTLEAL  FDKQKGKFSK  LGKKNQLCFA1020
HSVCFSNPIN  LVQSSWNNWS  EGKDIHSIDA  LAQKFDDGYR  IDVERYEPMT  PVSSHQVVNL1080
LLTRSPLNLN  GKTGNRTTDP  DNWCQGKWRI  LSIPDSNGMV  KVNGVQGFLT  NGDMVTLSKH1140
AAEIKAAGTV  VEIGSFMGLS  AIVMGHALRR  AGNCHAKIHC  VDTWDSSYLH  KIGINTDKSL1200
IEIFKSNIKH  NGLNFLINLH  PMASIDASST  FKDNAIDLLF  IDGDHCYESC  YQDLSAWYPK1260
VKDGGIILGH  DCRPGGEVIH  ALEKFVKEKQ  IPYELIKPPV  ANFIFKIKKC  RPLQTFNSIV1320
AQPYNDVRKN  KKNLTSILIV  NHNGKKNLEA  CLASIRRNTF  EPYEIIVVDN  ASTDVSKEIL1380
RNFEDIILVE  NSENIGCPQA  RAQGLGYANG  EVVIFLDNDT  VVTPSWLSII  LSYFKKEKTI1440
GLVGPLSNFA  SGPQWVKNAS  YRSWEELDDL  ALKIHNLNKG  KKTATYRLVG  FCMAIRRDVI1500
DKIGSIDSKF  GKFGFEDDDY  TLRAIIAGFS  AVIARDLFIH  HTGGPQTHGD  PVYNKNLLNS1560
WNYFKQKWNL  PPDLKYGTPF  DREKVVSQPF  NAQRHFIPLQ  RPSKADVYDC  NSEVDMHGHI1620
SPQEKHIISH  INTLHLRGKT  TESINLLKAA  MEVFPDSVQI  ALFTANLMNE  NMDYALSETI1680
LRKIPDAERN  DDWFELMAYS  MEGQGTFDRA  DELINQALAQ  NCKKLSALLN  VKAVIAFKLG1740
KIEKAEYYLR  NIIQSGTTDG  RPYSNLGMIE  VNKGNTLEGL  HLIEQGFSLS  PQIEVVANNY1800
HHAVTAAGAF  KPALQVTSQA  CRKYPISKNL  NYLRINILLN  LQLKRPAMCC  IENAIAQFGL1860
EDGITIPAMS  LRNELGPMVL  NRNGLDWPSV  SLCMIVKNEV  DDLPGALESF  KNVVSEIIIV1920
DTGSVDETKI  IAEIFGATVL  DYTWKDNFAD  ARNESLVAAK  GEWILVVDAD  ERLSPTDQDR1980
FIQFLLNLSA  SECGYSFVTR  NYVNDVGLED  WRPNHGEYPL  EEMGKGWCPS  TKVRLFPNSA2040
KIRFENSIHE  LVEPSLREAG  YSIQDCLIPI  HHYGKLKKSK  ALKKKKDYFR  LGLKKKRENG2100
ETDYGLVELA  IQAGEVGDYD  KAVQLWQRVL  ENAPNLPKAH  FNLSYVYIQR  EQYQQGLEAA2160
QRAVNLDPNL  KEAQLNKMLC  KIRLNDPAAV  VGELAFFLEK  FPNHPMAMGL  AAVAYCLTSR2220
VEKGLLLFRN  LEQMAFDCGA  YVFEHVSKLL  SAGHKSAAKK  LLEAVADTPF  FSQASHNLLK2280
SFEDSKIQVA  SSKFLTISML  TKPNLEVADR  DLLSFMPEWE  KMQWQDIRII  KDRARADFVI2340
FPFALDRLYQ  QKGHPGMLSF  LRELPGFDQH  EDRYVFFFKD  DIGRRMDIRS  VIYRVNHSLD2400
AMDLNSITLP  YFVEDIYQSA  INRKPRYQVN  FVGTLATHLY  RAYMLLPFFE  KCQLKTYETL2460
LRSFSRLLNF  RKEKAEYIMA  LEEANTIIKQ  LFPLEKTIHG  VSYYFDIIAD  QFQQLPDQTQ2520
QHMKAKLKRI  MNASIATLCP  RGVGTQSIRF  FETMAMGRLP  VVISDRYVFP  LNNTIDYDQF2580
VIRIKETRIS  QFPERLAAVF  GRLSPDDSRK  MGARARQVWS  DYFSPSKYEK  YILLTLSEVL2640
KKRRQLNQKR  SI2652

Predicted 3D structure by AlphaFold2 with pLDDT = 74.89 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MINTYRRIDI  MAKYIYAQQR  LLNVESQWYK  DLYLDHINVL  NGFFEPDGSG  KNTSNKFINR60
YNNLLDEIHK  NGFDEEKSLI  PVGKNNLILD  GAHRIAACLL  YNFPVTCLFT  DTLAWEYNPI120
FFKFYEKHVK  GGLDEDWIDA  MVLQYCRLKR  NIYVASVFPS  AEGNDDVVVD  LLSKQAQIIY180
KKDIEIRGYG  QQLLIRQMYS  GEQWIGGVEN  KYLGARQKAY  FCFSKPGPLR  ILFLETDNKR240
ALSDAKEKIR  KIFNVGKHSI  HINDYHEETI  RLSEIYLNKN  SISFLNLANS  RIFPNFDKLF300
KVYKKWIGNN  EDKEKYCIDG  SSVMAVYGIR  EAVDIDFIVK  GIYNHHPIHR  LINCHNEESR360
YYPVKIDDII  FNPKNHFYFD  GVKFSSLNIV  QSMKINRNEK  KDRNDVELIE  KLLSKKKTYY420
LNKHQQIDEL  PTITKKIQKS  PKKIINCVYS  HTLFNGYCTK  KDDIFVIWSK  KPIKGSSIYY480
FQDAFSFHNI  NRGIKVLGMH  EPITVLPQQY  SEMVWKHFDF  VFTTLDDLVA  GNSKFVKIFH540
PAFDAPNSMD  SVKSVKMKYC  IPSQTKKIAI  CMIAGNKESQ  IEGELYSKRL  HIAKWFQQYS600
TIPFDVYGRP  PFHQLDNYCG  ILPTDDEKYS  KLSSYRYSLC  FENIYHSKWS  KGYLTEKILH660
CLMCGTVPIY  LGCSNIENYI  PRNCFIDFRD  FSDLDALDSF  LGETNDDQYQ  KYIVNIRKWI720
EAGNLDKFSM  YHIYDKLASI  AFPDTNMLQF  KQLPWKETPI  SKEFNNNQLE  TFGTKRWFWK780
DLSKITCSLL  PEMKDIVETR  KDFQNKNKRN  PIVNVIFSKN  RALQLNGTIQ  SFLLHCKDAQ840
NIDIKILYTT  TSNRHEEQYS  KLKKYYPEIQ  FIKENNFKKD  LENILSEYLY  VMFNVDDNIY900
IRDFSAFQII  NAFNCHEDIL  GCTLRLGQNT  IIKLHPVHKP  LQIPKFKNFN  DNLRVYNWTT960
LKPEGFGYPC  ELQSAVYRVS  DIGNIVKQFP  FRNPNTLEAL  FDKQKGKFSK  LGKKNQLCFA1020
HSVCFSNPIN  LVQSSWNNWS  EGKDIHSIDA  LAQKFDDGYR  IDVERYEPMT  PVSSHQVVNL1080
LLTRSPLNLN  GKTGNRTTDP  DNWCQGKWRI  LSIPDSNGMV  KVNGVQGFLT  NGDMVTLSKH1140
AAEIKAAGTV  VEIGSFMGLS  AIVMGHALRR  AGNCHAKIHC  VDTWDSSYLH  KIGINTDKSL1200
IEIFKSNIKH  NGLNFLINLH  PMASIDASST  FKDNAIDLLF  IDGDHCYESC  YQDLSAWYPK1260
VKDGGIILGH  DCRPGGEVIH  ALEKFVKEKQ  IPYELIKPPV  ANFIFKIKKC  RPLQTFNSIV1320
AQPYNDVRKN  KKNLTSILIV  NHNGKKNLEA  CLASIRRNTF  EPYEIIVVDN  ASTDVSKEIL1380
RNFEDIILVE  NSENIGCPQA  RAQGLGYANG  EVVIFLDNDT  VVTPSWLSII  LSYFKKEKTI1440
GLVGPLSNFA  SGPQWVKNAS  YRSWEELDDL  ALKIHNLNKG  KKTATYRLVG  FCMAIRRDVI1500
DKIGSIDSKF  GKFGFEDDDY  TLRAIIAGFS  AVIARDLFIH  HTGGPQTHGD  PVYNKNLLNS1560
WNYFKQKWNL  PPDLKYGTPF  DREKVVSQPF  NAQRHFIPLQ  RPSKADVYDC  NSEVDMHGHI1620
SPQEKHIISH  INTLHLRGKT  TESINLLKAA  MEVFPDSVQI  ALFTANLMNE  NMDYALSETI1680
LRKIPDAERN  DDWFELMAYS  MEGQGTFDRA  DELINQALAQ  NCKKLSALLN  VKAVIAFKLG1740
KIEKAEYYLR  NIIQSGTTDG  RPYSNLGMIE  VNKGNTLEGL  HLIEQGFSLS  PQIEVVANNY1800
HHAVTAAGAF  KPALQVTSQA  CRKYPISKNL  NYLRINILLN  LQLKRPAMCC  IENAIAQFGL1860
EDGITIPAMS  LRNELGPMVL  NRNGLDWPSV  SLCMIVKNEV  DDLPGALESF  KNVVSEIIIV1920
DTGSVDETKI  IAEIFGATVL  DYTWKDNFAD  ARNESLVAAK  GEWILVVDAD  ERLSPTDQDR1980
FIQFLLNLSA  SECGYSFVTR  NYVNDVGLED  WRPNHGEYPL  EEMGKGWCPS  TKVRLFPNSA2040
KIRFENSIHE  LVEPSLREAG  YSIQDCLIPI  HHYGKLKKSK  ALKKKKDYFR  LGLKKKRENG2100
ETDYGLVELA  IQAGEVGDYD  KAVQLWQRVL  ENAPNLPKAH  FNLSYVYIQR  EQYQQGLEAA2160
QRAVNLDPNL  KEAQLNKMLC  KIRLNDPAAV  VGELAFFLEK  FPNHPMAMGL  AAVAYCLTSR2220
VEKGLLLFRN  LEQMAFDCGA  YVFEHVSKLL  SAGHKSAAKK  LLEAVADTPF  FSQASHNLLK2280
SFEDSKIQVA  SSKFLTISML  TKPNLEVADR  DLLSFMPEWE  KMQWQDIRII  KDRARADFVI2340
FPFALDRLYQ  QKGHPGMLSF  LRELPGFDQH  EDRYVFFFKD  DIGRRMDIRS  VIYRVNHSLD2400
AMDLNSITLP  YFVEDIYQSA  INRKPRYQVN  FVGTLATHLY  RAYMLLPFFE  KCQLKTYETL2460
LRSFSRLLNF  RKEKAEYIMA  LEEANTIIKQ  LFPLEKTIHG  VSYYFDIIAD  QFQQLPDQTQ2520
QHMKAKLKRI  MNASIATLCP  RGVGTQSIRF  FETMAMGRLP  VVISDRYVFP  LNNTIDYDQF2580
VIRIKETRIS  QFPERLAAVF  GRLSPDDSRK  MGARARQVWS  DYFSPSKYEK  YILLTLSEVL2640
KKRRQLNQKR  SI2652

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT10(511-719)+GT74(815-1067)+GT2(1336-1503)+GT2(1891-2013)

MINTYRRIDI  MAKYIYAQQR  LLNVESQWYK  DLYLDHINVL  NGFFEPDGSG  KNTSNKFINR60
YNNLLDEIHK  NGFDEEKSLI  PVGKNNLILD  GAHRIAACLL  YNFPVTCLFT  DTLAWEYNPI120
FFKFYEKHVK  GGLDEDWIDA  MVLQYCRLKR  NIYVASVFPS  AEGNDDVVVD  LLSKQAQIIY180
KKDIEIRGYG  QQLLIRQMYS  GEQWIGGVEN  KYLGARQKAY  FCFSKPGPLR  ILFLETDNKR240
ALSDAKEKIR  KIFNVGKHSI  HINDYHEETI  RLSEIYLNKN  SISFLNLANS  RIFPNFDKLF300
KVYKKWIGNN  EDKEKYCIDG  SSVMAVYGIR  EAVDIDFIVK  GIYNHHPIHR  LINCHNEESR360
YYPVKIDDII  FNPKNHFYFD  GVKFSSLNIV  QSMKINRNEK  KDRNDVELIE  KLLSKKKTYY420
LNKHQQIDEL  PTITKKIQKS  PKKIINCVYS  HTLFNGYCTK  KDDIFVIWSK  KPIKGSSIYY480
FQDAFSFHNI  NRGIKVLGMH  EPITVLPQQY  SEMVWKHFDF  VFTTLDDLVA  GNSKFVKIFH540
PAFDAPNSMD  SVKSVKMKYC  IPSQTKKIAI  CMIAGNKESQ  IEGELYSKRL  HIAKWFQQYS600
TIPFDVYGRP  PFHQLDNYCG  ILPTDDEKYS  KLSSYRYSLC  FENIYHSKWS  KGYLTEKILH660
CLMCGTVPIY  LGCSNIENYI  PRNCFIDFRD  FSDLDALDSF  LGETNDDQYQ  KYIVNIRKWI720
EAGNLDKFSM  YHIYDKLASI  AFPDTNMLQF  KQLPWKETPI  SKEFNNNQLE  TFGTKRWFWK780
DLSKITCSLL  PEMKDIVETR  KDFQNKNKRN  PIVNVIFSKN  RALQLNGTIQ  SFLLHCKDAQ840
NIDIKILYTT  TSNRHEEQYS  KLKKYYPEIQ  FIKENNFKKD  LENILSEYLY  VMFNVDDNIY900
IRDFSAFQII  NAFNCHEDIL  GCTLRLGQNT  IIKLHPVHKP  LQIPKFKNFN  DNLRVYNWTT960
LKPEGFGYPC  ELQSAVYRVS  DIGNIVKQFP  FRNPNTLEAL  FDKQKGKFSK  LGKKNQLCFA1020
HSVCFSNPIN  LVQSSWNNWS  EGKDIHSIDA  LAQKFDDGYR  IDVERYEPMT  PVSSHQVVNL1080
LLTRSPLNLN  GKTGNRTTDP  DNWCQGKWRI  LSIPDSNGMV  KVNGVQGFLT  NGDMVTLSKH1140
AAEIKAAGTV  VEIGSFMGLS  AIVMGHALRR  AGNCHAKIHC  VDTWDSSYLH  KIGINTDKSL1200
IEIFKSNIKH  NGLNFLINLH  PMASIDASST  FKDNAIDLLF  IDGDHCYESC  YQDLSAWYPK1260
VKDGGIILGH  DCRPGGEVIH  ALEKFVKEKQ  IPYELIKPPV  ANFIFKIKKC  RPLQTFNSIV1320
AQPYNDVRKN  KKNLTSILIV  NHNGKKNLEA  CLASIRRNTF  EPYEIIVVDN  ASTDVSKEIL1380
RNFEDIILVE  NSENIGCPQA  RAQGLGYANG  EVVIFLDNDT  VVTPSWLSII  LSYFKKEKTI1440
GLVGPLSNFA  SGPQWVKNAS  YRSWEELDDL  ALKIHNLNKG  KKTATYRLVG  FCMAIRRDVI1500
DKIGSIDSKF  GKFGFEDDDY  TLRAIIAGFS  AVIARDLFIH  HTGGPQTHGD  PVYNKNLLNS1560
WNYFKQKWNL  PPDLKYGTPF  DREKVVSQPF  NAQRHFIPLQ  RPSKADVYDC  NSEVDMHGHI1620
SPQEKHIISH  INTLHLRGKT  TESINLLKAA  MEVFPDSVQI  ALFTANLMNE  NMDYALSETI1680
LRKIPDAERN  DDWFELMAYS  MEGQGTFDRA  DELINQALAQ  NCKKLSALLN  VKAVIAFKLG1740
KIEKAEYYLR  NIIQSGTTDG  RPYSNLGMIE  VNKGNTLEGL  HLIEQGFSLS  PQIEVVANNY1800
HHAVTAAGAF  KPALQVTSQA  CRKYPISKNL  NYLRINILLN  LQLKRPAMCC  IENAIAQFGL1860
EDGITIPAMS  LRNELGPMVL  NRNGLDWPSV  SLCMIVKNEV  DDLPGALESF  KNVVSEIIIV1920
DTGSVDETKI  IAEIFGATVL  DYTWKDNFAD  ARNESLVAAK  GEWILVVDAD  ERLSPTDQDR1980
FIQFLLNLSA  SECGYSFVTR  NYVNDVGLED  WRPNHGEYPL  EEMGKGWCPS  TKVRLFPNSA2040
KIRFENSIHE  LVEPSLREAG  YSIQDCLIPI  HHYGKLKKSK  ALKKKKDYFR  LGLKKKRENG2100
ETDYGLVELA  IQAGEVGDYD  KAVQLWQRVL  ENAPNLPKAH  FNLSYVYIQR  EQYQQGLEAA2160
QRAVNLDPNL  KEAQLNKMLC  KIRLNDPAAV  VGELAFFLEK  FPNHPMAMGL  AAVAYCLTSR2220
VEKGLLLFRN  LEQMAFDCGA  YVFEHVSKLL  SAGHKSAAKK  LLEAVADTPF  FSQASHNLLK2280
SFEDSKIQVA  SSKFLTISML  TKPNLEVADR  DLLSFMPEWE  KMQWQDIRII  KDRARADFVI2340
FPFALDRLYQ  QKGHPGMLSF  LRELPGFDQH  EDRYVFFFKD  DIGRRMDIRS  VIYRVNHSLD2400
AMDLNSITLP  YFVEDIYQSA  INRKPRYQVN  FVGTLATHLY  RAYMLLPFFE  KCQLKTYETL2460
LRSFSRLLNF  RKEKAEYIMA  LEEANTIIKQ  LFPLEKTIHG  VSYYFDIIAD  QFQQLPDQTQ2520
QHMKAKLKRI  MNASIATLCP  RGVGTQSIRF  FETMAMGRLP  VVISDRYVFP  LNNTIDYDQF2580
VIRIKETRIS  QFPERLAAVF  GRLSPDDSRK  MGARARQVWS  DYFSPSKYEK  YILLTLSEVL2640
KKRRQLNQKR  SI2652

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help