CAZyme3D

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Entry ID

Information for CAZyme ID: BBO67272.1

Basic Information

GenBank IDBBO67272.1
FamilyGT4
Sequence Length376
UniProt IDA0A5K7YCU1(100,100)Download
Average pLDDT?92.67
CAZy50 ID115079
CAZy50 RepYes, BBO67272.1
Structure ClusterSC_GT4_clus864
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID571177
KingdomBacteria
PhylumThermodesulfobacteriota
ClassDesulfobacteria
OrderDesulfobacterales
FamilyDesulfosarcinaceae
GenusDesulfosarcina
SpeciesDesulfosarcina alkanivorans

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MQVNKKNNIL  FILPQLKSGG  SENTVLDLAL  NFKKRGDAVF  VISFCPGPLI  DKFANHGVRV60
FCLTKKYRFD  VLLIYKIYKI  IITNNIKVVN  AHHYISLFYS  FFPSCLSNTR  LIYTEHSTTE120
VDGIYHSFHR  YLFEKMLRHV  HLVVGVSDKI  TKSFIKKYQK  STTKFVTVYN  SVDLEVFESC180
SKRNEVRSLF  GINKENYVIG  IVANFRMVKN  HLCLVKAFSK  INKIQPHARL  LFVGTGFDDD240
NVNSEKTVRQ  LITQLNLTDK  VIFAGYQDDV  PAMLSAMDAF  CLPSFSEGFP  VSLLEALSTG300
LICIGSDVTG  VSEIISDNET  GFLFNSDDDG  ELSEILNRVI  NGSYDQMRIQ  KNARRLLEHQ360
FSHQAWINNI  KRAFWD376

Predicted 3D structure by AlphaFold2 with pLDDT = 92.67 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MQVNKKNNIL  FILPQLKSGG  SENTVLDLAL  NFKKRGDAVF  VISFCPGPLI  DKFANHGVRV60
FCLTKKYRFD  VLLIYKIYKI  IITNNIKVVN  AHHYISLFYS  FFPSCLSNTR  LIYTEHSTTE120
VDGIYHSFHR  YLFEKMLRHV  HLVVGVSDKI  TKSFIKKYQK  STTKFVTVYN  SVDLEVFESC180
SKRNEVRSLF  GINKENYVIG  IVANFRMVKN  HLCLVKAFSK  INKIQPHARL  LFVGTGFDDD240
NVNSEKTVRQ  LITQLNLTDK  VIFAGYQDDV  PAMLSAMDAF  CLPSFSEGFP  VSLLEALSTG300
LICIGSDVTG  VSEIISDNET  GFLFNSDDDG  ELSEILNRVI  NGSYDQMRIQ  KNARRLLEHQ360
FSHQAWINNI  KRAFWD376

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT4(192-341)

MQVNKKNNIL  FILPQLKSGG  SENTVLDLAL  NFKKRGDAVF  VISFCPGPLI  DKFANHGVRV60
FCLTKKYRFD  VLLIYKIYKI  IITNNIKVVN  AHHYISLFYS  FFPSCLSNTR  LIYTEHSTTE120
VDGIYHSFHR  YLFEKMLRHV  HLVVGVSDKI  TKSFIKKYQK  STTKFVTVYN  SVDLEVFESC180
SKRNEVRSLF  GINKENYVIG  IVANFRMVKN  HLCLVKAFSK  INKIQPHARL  LFVGTGFDDD240
NVNSEKTVRQ  LITQLNLTDK  VIFAGYQDDV  PAMLSAMDAF  CLPSFSEGFP  VSLLEALSTG300
LICIGSDVTG  VSEIISDNET  GFLFNSDDDG  ELSEILNRVI  NGSYDQMRIQ  KNARRLLEHQ360
FSHQAWINNI  KRAFWD376

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help