CAZyme3D

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Entry ID

Information for CAZyme ID: BBM17186.1

Basic Information

GenBank IDBBM17186.1
FamilyGH32
Sequence Length499
UniProt IDA0A7U6QVF8(100,100)Download
Average pLDDT?95.76
CAZy50 ID69102
CAZy50 RepYes, BBM17186.1
Structure ClusterSC_GH32_clus114
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID33945
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyEnterococcaceae
GenusEnterococcus
SpeciesEnterococcus avium

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSNELMKKNI  ARAQAEIAEK  KAEVSKGAMR  QKYHFMTEAG  WLNDPNGLIY  FKGKYHFFYQ60
YNPYDSYWGS  MHWGHAISDD  MLHWEYLPLA  LAPSETYDNH  PKGGCFSGSA  IECEGRLYLL120
YTASTNYGDG  FVQNQCMAYS  DDGIHFVKSE  KNPIIAAPPT  GYDVGEFRDP  KVWKHEDYFY180
LVCSGKKDEL  GQALLYRSKN  LEDWDFFNVL  AESRGEFGYM  WECPDFFPLK  NANGEKYVLT240
FSPMGVKERT  SIYLVGDMNY  ETGKFNYTTV  GNIDWGFDYY  APQSFVDQSG  RRILVAWANG300
WDWMRWWKDW  GPTFKEGWCG  SFNLPREAIL  DTDNTVKFVP  IEELQSIRKS  VEAIHKKSIL360
EKGEFSIPTA  NGNCFELEMT  IDLANSTADS  FELRLRSNDH  LATIATFDLR  KQILTVSRDN420
SDDWSQGTTK  SNLLLEDEET  LKIHLFVDQS  SIEIFTDDYK  TNHSLNVFAK  EDQNRNYVSV480
AEGTLVINQL  ETWELTKTM499

Predicted 3D structure by AlphaFold2 with pLDDT = 95.76 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MSNELMKKNI  ARAQAEIAEK  KAEVSKGAMR  QKYHFMTEAG  WLNDPNGLIY  FKGKYHFFYQ60
YNPYDSYWGS  MHWGHAISDD  MLHWEYLPLA  LAPSETYDNH  PKGGCFSGSA  IECEGRLYLL120
YTASTNYGDG  FVQNQCMAYS  DDGIHFVKSE  KNPIIAAPPT  GYDVGEFRDP  KVWKHEDYFY180
LVCSGKKDEL  GQALLYRSKN  LEDWDFFNVL  AESRGEFGYM  WECPDFFPLK  NANGEKYVLT240
FSPMGVKERT  SIYLVGDMNY  ETGKFNYTTV  GNIDWGFDYY  APQSFVDQSG  RRILVAWANG300
WDWMRWWKDW  GPTFKEGWCG  SFNLPREAIL  DTDNTVKFVP  IEELQSIRKS  VEAIHKKSIL360
EKGEFSIPTA  NGNCFELEMT  IDLANSTADS  FELRLRSNDH  LATIATFDLR  KQILTVSRDN420
SDDWSQGTTK  SNLLLEDEET  LKIHLFVDQS  SIEIFTDDYK  TNHSLNVFAK  EDQNRNYVSV480
AEGTLVINQL  ETWELTKTM499

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH32(34-334)

MSNELMKKNI  ARAQAEIAEK  KAEVSKGAMR  QKYHFMTEAG  WLNDPNGLIY  FKGKYHFFYQ60
YNPYDSYWGS  MHWGHAISDD  MLHWEYLPLA  LAPSETYDNH  PKGGCFSGSA  IECEGRLYLL120
YTASTNYGDG  FVQNQCMAYS  DDGIHFVKSE  KNPIIAAPPT  GYDVGEFRDP  KVWKHEDYFY180
LVCSGKKDEL  GQALLYRSKN  LEDWDFFNVL  AESRGEFGYM  WECPDFFPLK  NANGEKYVLT240
FSPMGVKERT  SIYLVGDMNY  ETGKFNYTTV  GNIDWGFDYY  APQSFVDQSG  RRILVAWANG300
WDWMRWWKDW  GPTFKEGWCG  SFNLPREAIL  DTDNTVKFVP  IEELQSIRKS  VEAIHKKSIL360
EKGEFSIPTA  NGNCFELEMT  IDLANSTADS  FELRLRSNDH  LATIATFDLR  KQILTVSRDN420
SDDWSQGTTK  SNLLLEDEET  LKIHLFVDQS  SIEIFTDDYK  TNHSLNVFAK  EDQNRNYVSV480
AEGTLVINQL  ETWELTKTM499

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help