CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: BBJ24732.1

Basic Information

GenBank IDBBJ24732.1
FamilyGH133
Sequence Length681
UniProt IDA0A455X634(100,100)Download
Average pLDDT?94.26
CAZy50 ID40958
CAZy50 RepYes, BBJ24732.1
Structure ClusterSC_GH133_clus10
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2559597
KingdomBacteria
PhylumPseudomonadota
ClassBetaproteobacteria
OrderNitrosomonadales
FamilyGallionellaceae
GenusCandidatus Nitrotoga
SpeciesCandidatus Nitrotoga sp. AM1P

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MIQSISIKAI  DETTFQLGRG  VCGNFERAIE  LEWLVKNGMG  GYASGTVGDL  NTRRYHGLLM60
AALSPPAGRT  LLVAKVDATV  RYGSKTYHLS  CNEFADGTVT  PHGYLHLESF  FLEGTVPVWH120
YALADALIEK  RVLMAPGQNT  TYLHFRVLRA  SDTLELELTP  LCTYRDYHSH  NQGGWDMPIR180
GITNGFEIHA  FQSARPYRVM  CDGAQFIADP  AWYWNFKHRM  ETARGLDDSE  DLFCPGRFTL240
ALGDGQDATL  VISAESASPE  DFAVVCARIH  ESSKALFAAL  PSDAPRWIKQ  MALATDQFIV300
DRYHGGHPAG  KTVIAGYPWF  GDWGRDTMIA  LPGLTLALQR  FDIAASILRT  YAAHISEGML360
PNRFPDHDET  PEYNAVDATL  WYFHAVDQYT  KRSGDIALAK  ELYPVLVDIL  EYHRKGTRYG420
IKVDIHDGLL  DAGEDGTQLT  WMDVKIGDWA  VTPRIGKPVE  VNALWYNALV  IMADLSKQLG480
KIESADEYRE  AAAQVRSSFQ  RFWNDEQSYL  YDVIDGPEGV  PDFNGRKYDS  RLRPNQILAV540
ALPNSALDKN  QQKAIVDICA  RELLTSHGLR  SLARNQPGYV  AYYRGNPVQR  DAAYHQGTVW600
AWLIGPFVDA  HYRVYRDADK  ARSFLEPLGL  HLGEACVGNV  SEIFDAEPPF  APRGCFAQAW660
SVAEVLRAWL  DLHDVSIGKG  K681

Predicted 3D structure by AlphaFold2 with pLDDT = 94.26 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MIQSISIKAI  DETTFQLGRG  VCGNFERAIE  LEWLVKNGMG  GYASGTVGDL  NTRRYHGLLM60
AALSPPAGRT  LLVAKVDATV  RYGSKTYHLS  CNEFADGTVT  PHGYLHLESF  FLEGTVPVWH120
YALADALIEK  RVLMAPGQNT  TYLHFRVLRA  SDTLELELTP  LCTYRDYHSH  NQGGWDMPIR180
GITNGFEIHA  FQSARPYRVM  CDGAQFIADP  AWYWNFKHRM  ETARGLDDSE  DLFCPGRFTL240
ALGDGQDATL  VISAESASPE  DFAVVCARIH  ESSKALFAAL  PSDAPRWIKQ  MALATDQFIV300
DRYHGGHPAG  KTVIAGYPWF  GDWGRDTMIA  LPGLTLALQR  FDIAASILRT  YAAHISEGML360
PNRFPDHDET  PEYNAVDATL  WYFHAVDQYT  KRSGDIALAK  ELYPVLVDIL  EYHRKGTRYG420
IKVDIHDGLL  DAGEDGTQLT  WMDVKIGDWA  VTPRIGKPVE  VNALWYNALV  IMADLSKQLG480
KIESADEYRE  AAAQVRSSFQ  RFWNDEQSYL  YDVIDGPEGV  PDFNGRKYDS  RLRPNQILAV540
ALPNSALDKN  QQKAIVDICA  RELLTSHGLR  SLARNQPGYV  AYYRGNPVQR  DAAYHQGTVW600
AWLIGPFVDA  HYRVYRDADK  ARSFLEPLGL  HLGEACVGNV  SEIFDAEPPF  APRGCFAQAW660
SVAEVLRAWL  DLHDVSIGKG  K681

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH133(308-667)

MIQSISIKAI  DETTFQLGRG  VCGNFERAIE  LEWLVKNGMG  GYASGTVGDL  NTRRYHGLLM60
AALSPPAGRT  LLVAKVDATV  RYGSKTYHLS  CNEFADGTVT  PHGYLHLESF  FLEGTVPVWH120
YALADALIEK  RVLMAPGQNT  TYLHFRVLRA  SDTLELELTP  LCTYRDYHSH  NQGGWDMPIR180
GITNGFEIHA  FQSARPYRVM  CDGAQFIADP  AWYWNFKHRM  ETARGLDDSE  DLFCPGRFTL240
ALGDGQDATL  VISAESASPE  DFAVVCARIH  ESSKALFAAL  PSDAPRWIKQ  MALATDQFIV300
DRYHGGHPAG  KTVIAGYPWF  GDWGRDTMIA  LPGLTLALQR  FDIAASILRT  YAAHISEGML360
PNRFPDHDET  PEYNAVDATL  WYFHAVDQYT  KRSGDIALAK  ELYPVLVDIL  EYHRKGTRYG420
IKVDIHDGLL  DAGEDGTQLT  WMDVKIGDWA  VTPRIGKPVE  VNALWYNALV  IMADLSKQLG480
KIESADEYRE  AAAQVRSSFQ  RFWNDEQSYL  YDVIDGPEGV  PDFNGRKYDS  RLRPNQILAV540
ALPNSALDKN  QQKAIVDICA  RELLTSHGLR  SLARNQPGYV  AYYRGNPVQR  DAAYHQGTVW600
AWLIGPFVDA  HYRVYRDADK  ARSFLEPLGL  HLGEACVGNV  SEIFDAEPPF  APRGCFAQAW660
SVAEVLRAWL  DLHDVSIGKG  K681

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help