CAZyme3D

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Entry ID

Information for CAZyme ID: BBJ22955.1

Basic Information

GenBank IDBBJ22955.1
FamilyGH8
Sequence Length403
UniProt IDA0A455XA66(100,100)Download
Average pLDDT?89.13
CAZy50 ID97372
CAZy50 RepYes, BBJ22955.1
Structure ClusterSC_GH8_clus43
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2559597
KingdomBacteria
PhylumPseudomonadota
ClassBetaproteobacteria
OrderNitrosomonadales
FamilyGallionellaceae
GenusCandidatus Nitrotoga
SpeciesCandidatus Nitrotoga sp. AM1P

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MEYLFVDTGR  KASILLYRGY  QILATLCFCW  GTAQAVTTEP  TCQADWPAWQ  NFKSEFINEG60
GRVVDGSTPR  KQTVSEGQAY  ALFFALVAND  RKTFDKILQW  TENNLANGDL  TSHLPAWLWG120
RRDDGSWGVL  DSNPASDADL  WIVYALGEAG  RLWGERRFVA  LSSLLASRIL  REETADLPGL180
GPTLLPAPRG  FQTGVKTWRL  NPSYLPIQLM  DWLSSRSPDS  TWRRISESSQ  RILLESAPNG240
FSPDWTVYQD  SKGFRIDSAG  KEKGTGGYNA  IRVYLWAGML  APDASARPRL  LAAFSPMASF300
ITRHGYPPES  VNIITGEANG  PGPSGFSAAL  LPFLAAREDS  AALQAQRDRL  TARPPRPDAY360
YEQALSLFAH  GWMDGRYHFT  TNGSLLLSWQ  KPCSSASSRL  PSH403

Predicted 3D structure by AlphaFold2 with pLDDT = 89.13 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MEYLFVDTGR  KASILLYRGY  QILATLCFCW  GTAQAVTTEP  TCQADWPAWQ  NFKSEFINEG60
GRVVDGSTPR  KQTVSEGQAY  ALFFALVAND  RKTFDKILQW  TENNLANGDL  TSHLPAWLWG120
RRDDGSWGVL  DSNPASDADL  WIVYALGEAG  RLWGERRFVA  LSSLLASRIL  REETADLPGL180
GPTLLPAPRG  FQTGVKTWRL  NPSYLPIQLM  DWLSSRSPDS  TWRRISESSQ  RILLESAPNG240
FSPDWTVYQD  SKGFRIDSAG  KEKGTGGYNA  IRVYLWAGML  APDASARPRL  LAAFSPMASF300
ITRHGYPPES  VNIITGEANG  PGPSGFSAAL  LPFLAAREDS  AALQAQRDRL  TARPPRPDAY360
YEQALSLFAH  GWMDGRYHFT  TNGSLLLSWQ  KPCSSASSRL  PSH403

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH8(46-373)

MEYLFVDTGR  KASILLYRGY  QILATLCFCW  GTAQAVTTEP  TCQADWPAWQ  NFKSEFINEG60
GRVVDGSTPR  KQTVSEGQAY  ALFFALVAND  RKTFDKILQW  TENNLANGDL  TSHLPAWLWG120
RRDDGSWGVL  DSNPASDADL  WIVYALGEAG  RLWGERRFVA  LSSLLASRIL  REETADLPGL180
GPTLLPAPRG  FQTGVKTWRL  NPSYLPIQLM  DWLSSRSPDS  TWRRISESSQ  RILLESAPNG240
FSPDWTVYQD  SKGFRIDSAG  KEKGTGGYNA  IRVYLWAGML  APDASARPRL  LAAFSPMASF300
ITRHGYPPES  VNIITGEANG  PGPSGFSAAL  LPFLAAREDS  AALQAQRDRL  TARPPRPDAY360
YEQALSLFAH  GWMDGRYHFT  TNGSLLLSWQ  KPCSSASSRL  PSH403

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help