CAZyme3D

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Entry ID

Information for CAZyme ID: BBH93104.1

Basic Information

GenBank IDBBH93104.1
FamilyGH5_7
Sequence Length424
UniProt IDA0A455T660(100,100)Download
Average pLDDT?87.36
CAZy50 ID87724
CAZy50 RepYes, BBH93104.1
Structure ClusterSC_GH5_clus115
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2045280
KingdomBacteria
PhylumChloroflexota
ClassKtedonobacteria
OrderThermogemmatisporales
FamilyThermogemmatisporaceae
GenusThermogemmatispora
SpeciesThermogemmatispora argillosa

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MQDAHADDSP  RLSVSRRAFL  GAAAAAGLGL  WAAGTGFGAG  TAFARPSGDT  ASPPRFSAAS60
LRQKRDSFVT  RRGPIFMLGG  EPFYFAGTNN  YYMHYQSHFM  IDDVLKDVVA  MGLPVLRIWG120
FLDGQPHNGF  VMQPSPGVYP  EDGYERFDYT  VWRAGQLGIK  LVVPLVNNWD  DFGGMNQYVA180
WFGASGHDDF  YTNPQIKAAY  KAYVRHFLHR  VNRYTGKPLY  HDPTIMTWEL  ANEPRCQSDP240
SGQTLTAWVR  EMSAFIKSMD  GLHLVAVGDE  GWYNEPGNTD  WTRNGSQGVD  WKRLVALPTV300
DYGTFHLYPD  YWGKDNAWSL  QWIADHIRDG  HALGKPVVLE  EYGWLDMATR  DNIYRQWTDQ360
VYRLNGNGDQ  FWILTGLQDD  GTLYPNYDGF  RVTYPSSTAT  VIAQHAAQMR  AKSQRPARGP420
QVRA424

Predicted 3D structure by AlphaFold2 with pLDDT = 87.36 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MQDAHADDSP  RLSVSRRAFL  GAAAAAGLGL  WAAGTGFGAG  TAFARPSGDT  ASPPRFSAAS60
LRQKRDSFVT  RRGPIFMLGG  EPFYFAGTNN  YYMHYQSHFM  IDDVLKDVVA  MGLPVLRIWG120
FLDGQPHNGF  VMQPSPGVYP  EDGYERFDYT  VWRAGQLGIK  LVVPLVNNWD  DFGGMNQYVA180
WFGASGHDDF  YTNPQIKAAY  KAYVRHFLHR  VNRYTGKPLY  HDPTIMTWEL  ANEPRCQSDP240
SGQTLTAWVR  EMSAFIKSMD  GLHLVAVGDE  GWYNEPGNTD  WTRNGSQGVD  WKRLVALPTV300
DYGTFHLYPD  YWGKDNAWSL  QWIADHIRDG  HALGKPVVLE  EYGWLDMATR  DNIYRQWTDQ360
VYRLNGNGDQ  FWILTGLQDD  GTLYPNYDGF  RVTYPSSTAT  VIAQHAAQMR  AKSQRPARGP420
QVRA424

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_7(100-373)

MQDAHADDSP  RLSVSRRAFL  GAAAAAGLGL  WAAGTGFGAG  TAFARPSGDT  ASPPRFSAAS60
LRQKRDSFVT  RRGPIFMLGG  EPFYFAGTNN  YYMHYQSHFM  IDDVLKDVVA  MGLPVLRIWG120
FLDGQPHNGF  VMQPSPGVYP  EDGYERFDYT  VWRAGQLGIK  LVVPLVNNWD  DFGGMNQYVA180
WFGASGHDDF  YTNPQIKAAY  KAYVRHFLHR  VNRYTGKPLY  HDPTIMTWEL  ANEPRCQSDP240
SGQTLTAWVR  EMSAFIKSMD  GLHLVAVGDE  GWYNEPGNTD  WTRNGSQGVD  WKRLVALPTV300
DYGTFHLYPD  YWGKDNAWSL  QWIADHIRDG  HALGKPVVLE  EYGWLDMATR  DNIYRQWTDQ360
VYRLNGNGDQ  FWILTGLQDD  GTLYPNYDGF  RVTYPSSTAT  VIAQHAAQMR  AKSQRPARGP420
QVRA424

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help