CAZyme3D

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Entry ID

Information for CAZyme ID: BBF45207.1

Basic Information

GenBank IDBBF45207.1
FamilyGH2
Sequence Length1025
UniProt IDA0A7U6KJY4(100,100)Download
Average pLDDT?95.10
CAZy50 ID13249
CAZy50 RepYes, BBF45207.1
Structure ClusterSC_GH2_clus84
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2093742
KingdomBacteria
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
Genus
SpeciesLachnospiraceae bacterium KM106-2

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRRVEVPDRK  WLSDPEVFAV  NREEAHSDHW  FYEKMEDIAY  GDAMPLKQSL  NGTWRFAFAK60
NPEVRLKEFY  QEDFDDTSLD  FIQVPGHIEL  QGYDKIQYIN  TLYPWDGLDE  LRPPEISKTD120
NPVSSYVKTF  ELKEELQGKE  TFLSLQGVES  ACYIWVNGSF  VGYAEDGFTP  SEFNITSFLK180
KGTNRLAIEV  YKRSSGSWIE  DQDFWRFSGI  FREVYLYAVP  STHVEDLFIK  TALSDSYTTG240
NLKADIRLSG  EMDCMVKAYI  LGKDGVRREL  GQKAAAEQIT  LEAKFENVDL  WSAEQPNLYQ300
LFIELYKGDQ  LVEVVPYSFG  FREFKMIDKV  MCLNGKRIVF  KGVNRHEFNA  RRGRNITKED360
MLWDIRFMKQ  HNINAVRTSH  YPNQSEWYRL  CDEYGIYLID  ETNMESHGSW  QKLGKLDPEW420
NVPGDKKEWL  GAILDRAKSM  VERDKNHASV  LIWSCGNESY  AGKDILEMSH  YFHEKDPDRL480
VHYEGVFWNR  EYEETSDMES  RMYAKPNEII  EYLKDSPKKP  YISCEYMHAM  GNSLGGMKKY540
IELEKYPMYQ  GGFIWDYIDQ  AIYKTLEDGR  EVLAYGGDFM  DRPTDYNFVT  NGIVYADRTP600
SPKAQEVKYL  YQDLKLYPDE  TGFVIKNEQL  FASTDAYEMI  YQVKRDGETI  YEQKASCHVL660
AGEERKIVLE  VPTWEAPGVY  TYQVSACLKE  NRIFAKAGYE  IAFGQKVNVI  SKETKMVKKE720
MRVVHGDGHL  GIHGDGFNIL  FSAPEGGIVS  LKYDGKEYIT  RAPKPYYYRA  STDNDRGYGY780
PFECGCYMQA  GMFQKCTDMK  VDEKDDQVVI  TYTYLLPLPK  KVETYVEYTV  TGDGTIQVHL840
TYPGAADLPM  LPLFGYSMKL  YSDMQQVRYF  GKGPDENYID  RCEGARVDWF  ETTPEKNVSG900
YIVPQECGNR  TSVYEIQIKD  QHGQGLKIQA  VDKPIEFSVL  PYSVYELENA  MHHYELPNPA960
YTYLNLIGSQ  MGVGGDDSWG  ARVHKEYEID  SSERLEYTFC  ISAFSLSTKS  PSLDERHLSS1020
SYFNQ1025

Predicted 3D structure by AlphaFold2 with pLDDT = 95.10 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MRRVEVPDRK  WLSDPEVFAV  NREEAHSDHW  FYEKMEDIAY  GDAMPLKQSL  NGTWRFAFAK60
NPEVRLKEFY  QEDFDDTSLD  FIQVPGHIEL  QGYDKIQYIN  TLYPWDGLDE  LRPPEISKTD120
NPVSSYVKTF  ELKEELQGKE  TFLSLQGVES  ACYIWVNGSF  VGYAEDGFTP  SEFNITSFLK180
KGTNRLAIEV  YKRSSGSWIE  DQDFWRFSGI  FREVYLYAVP  STHVEDLFIK  TALSDSYTTG240
NLKADIRLSG  EMDCMVKAYI  LGKDGVRREL  GQKAAAEQIT  LEAKFENVDL  WSAEQPNLYQ300
LFIELYKGDQ  LVEVVPYSFG  FREFKMIDKV  MCLNGKRIVF  KGVNRHEFNA  RRGRNITKED360
MLWDIRFMKQ  HNINAVRTSH  YPNQSEWYRL  CDEYGIYLID  ETNMESHGSW  QKLGKLDPEW420
NVPGDKKEWL  GAILDRAKSM  VERDKNHASV  LIWSCGNESY  AGKDILEMSH  YFHEKDPDRL480
VHYEGVFWNR  EYEETSDMES  RMYAKPNEII  EYLKDSPKKP  YISCEYMHAM  GNSLGGMKKY540
IELEKYPMYQ  GGFIWDYIDQ  AIYKTLEDGR  EVLAYGGDFM  DRPTDYNFVT  NGIVYADRTP600
SPKAQEVKYL  YQDLKLYPDE  TGFVIKNEQL  FASTDAYEMI  YQVKRDGETI  YEQKASCHVL660
AGEERKIVLE  VPTWEAPGVY  TYQVSACLKE  NRIFAKAGYE  IAFGQKVNVI  SKETKMVKKE720
MRVVHGDGHL  GIHGDGFNIL  FSAPEGGIVS  LKYDGKEYIT  RAPKPYYYRA  STDNDRGYGY780
PFECGCYMQA  GMFQKCTDMK  VDEKDDQVVI  TYTYLLPLPK  KVETYVEYTV  TGDGTIQVHL840
TYPGAADLPM  LPLFGYSMKL  YSDMQQVRYF  GKGPDENYID  RCEGARVDWF  ETTPEKNVSG900
YIVPQECGNR  TSVYEIQIKD  QHGQGLKIQA  VDKPIEFSVL  PYSVYELENA  MHHYELPNPA960
YTYLNLIGSQ  MGVGGDDSWG  ARVHKEYEID  SSERLEYTFC  ISAFSLSTKS  PSLDERHLSS1020
SYFNQ1025

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH2(40-887)

MRRVEVPDRK  WLSDPEVFAV  NREEAHSDHW  FYEKMEDIAY  GDAMPLKQSL  NGTWRFAFAK60
NPEVRLKEFY  QEDFDDTSLD  FIQVPGHIEL  QGYDKIQYIN  TLYPWDGLDE  LRPPEISKTD120
NPVSSYVKTF  ELKEELQGKE  TFLSLQGVES  ACYIWVNGSF  VGYAEDGFTP  SEFNITSFLK180
KGTNRLAIEV  YKRSSGSWIE  DQDFWRFSGI  FREVYLYAVP  STHVEDLFIK  TALSDSYTTG240
NLKADIRLSG  EMDCMVKAYI  LGKDGVRREL  GQKAAAEQIT  LEAKFENVDL  WSAEQPNLYQ300
LFIELYKGDQ  LVEVVPYSFG  FREFKMIDKV  MCLNGKRIVF  KGVNRHEFNA  RRGRNITKED360
MLWDIRFMKQ  HNINAVRTSH  YPNQSEWYRL  CDEYGIYLID  ETNMESHGSW  QKLGKLDPEW420
NVPGDKKEWL  GAILDRAKSM  VERDKNHASV  LIWSCGNESY  AGKDILEMSH  YFHEKDPDRL480
VHYEGVFWNR  EYEETSDMES  RMYAKPNEII  EYLKDSPKKP  YISCEYMHAM  GNSLGGMKKY540
IELEKYPMYQ  GGFIWDYIDQ  AIYKTLEDGR  EVLAYGGDFM  DRPTDYNFVT  NGIVYADRTP600
SPKAQEVKYL  YQDLKLYPDE  TGFVIKNEQL  FASTDAYEMI  YQVKRDGETI  YEQKASCHVL660
AGEERKIVLE  VPTWEAPGVY  TYQVSACLKE  NRIFAKAGYE  IAFGQKVNVI  SKETKMVKKE720
MRVVHGDGHL  GIHGDGFNIL  FSAPEGGIVS  LKYDGKEYIT  RAPKPYYYRA  STDNDRGYGY780
PFECGCYMQA  GMFQKCTDMK  VDEKDDQVVI  TYTYLLPLPK  KVETYVEYTV  TGDGTIQVHL840
TYPGAADLPM  LPLFGYSMKL  YSDMQQVRYF  GKGPDENYID  RCEGARVDWF  ETTPEKNVSG900
YIVPQECGNR  TSVYEIQIKD  QHGQGLKIQA  VDKPIEFSVL  PYSVYELENA  MHHYELPNPA960
YTYLNLIGSQ  MGVGGDDSWG  ARVHKEYEID  SSERLEYTFC  ISAFSLSTKS  PSLDERHLSS1020
SYFNQ1025

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help