CAZyme3D

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Entry ID

Information for CAZyme ID: BBB15976.1

Basic Information

GenBank IDBBB15976.1
FamilyAA3_2
Sequence Length597
UniProt IDA0A2Z5UWZ3(100,100)Download
Average pLDDT?88.77
CAZy50 ID52770
CAZy50 RepYes, BBB15976.1
Structure ClusterSC_AA3_clus94
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID29057
KingdomEukaryota
PhylumArthropoda
ClassInsecta
OrderLepidoptera
FamilyCrambidae
GenusOstrinia
SpeciesOstrinia nubilalis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

SLLLLLLASG  SRADLFSKAT  RTKADERDLR  NSVFDFIIVG  GGTAGCVLAN  RLSAAHDWKV60
LLIEAGDEEN  VDYDIPGVPT  KDYRPILWNY  RTERNGFSCL  SRPGGSCEVR  TGKVLGGSSV120
TNDMKYTRGH  KVDYDGWHSA  GALGSLDWKF  GNLIDYFKAS  EDNGDYDTLV  NSLYHARGGE180
MRVQRFKNID  RYTEVFTTAF  SEMGLRTVDI  NTNVAEAIVN  HQFAMANNTR  LSTNSAFLKP240
VKHRKNLTIM  TGATVTKIMI  DKQEKTVDGV  MYEFEKGKEK  PAYAKRETIL  TTGAINNVKL300
LHLSGIGPKA  ELKKHNITTI  VDLPVGLNYQ  DQVSTGGLSF  AINDIAPVSE  IQVINDFKTW360
FQNRNGPLAS  RGVGQVSAFL  QLYESVNAPD  VELSLEGNFI  RSDKFMLTNI  SVHAAEETNL420
PLPYYNLVNI  HPILLRPKSK  GKVMLNKRNP  NYGRPIIQAN  LLKETEDLDT  LVDSIDIALQ480
LLQTKEMKRA  EIKLAPLDVF  PCDRLANRDQ  WNCITRHYTK  AVGNPIGTCR  MGENATDSVV540
DFNLRVHGVE  RLRIVDASVM  PTHVRGGIFA  PTMMIAEKAS  KMILKDWKES  NGLYNDR597

Predicted 3D structure by AlphaFold2 with pLDDT = 88.77 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

SLLLLLLASG  SRADLFSKAT  RTKADERDLR  NSVFDFIIVG  GGTAGCVLAN  RLSAAHDWKV60
LLIEAGDEEN  VDYDIPGVPT  KDYRPILWNY  RTERNGFSCL  SRPGGSCEVR  TGKVLGGSSV120
TNDMKYTRGH  KVDYDGWHSA  GALGSLDWKF  GNLIDYFKAS  EDNGDYDTLV  NSLYHARGGE180
MRVQRFKNID  RYTEVFTTAF  SEMGLRTVDI  NTNVAEAIVN  HQFAMANNTR  LSTNSAFLKP240
VKHRKNLTIM  TGATVTKIMI  DKQEKTVDGV  MYEFEKGKEK  PAYAKRETIL  TTGAINNVKL300
LHLSGIGPKA  ELKKHNITTI  VDLPVGLNYQ  DQVSTGGLSF  AINDIAPVSE  IQVINDFKTW360
FQNRNGPLAS  RGVGQVSAFL  QLYESVNAPD  VELSLEGNFI  RSDKFMLTNI  SVHAAEETNL420
PLPYYNLVNI  HPILLRPKSK  GKVMLNKRNP  NYGRPIIQAN  LLKETEDLDT  LVDSIDIALQ480
LLQTKEMKRA  EIKLAPLDVF  PCDRLANRDQ  WNCITRHYTK  AVGNPIGTCR  MGENATDSVV540
DFNLRVHGVE  RLRIVDASVM  PTHVRGGIFA  PTMMIAEKAS  KMILKDWKES  NGLYNDR597

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : AA3_2(34-586)

SLLLLLLASG  SRADLFSKAT  RTKADERDLR  NSVFDFIIVG  GGTAGCVLAN  RLSAAHDWKV60
LLIEAGDEEN  VDYDIPGVPT  KDYRPILWNY  RTERNGFSCL  SRPGGSCEVR  TGKVLGGSSV120
TNDMKYTRGH  KVDYDGWHSA  GALGSLDWKF  GNLIDYFKAS  EDNGDYDTLV  NSLYHARGGE180
MRVQRFKNID  RYTEVFTTAF  SEMGLRTVDI  NTNVAEAIVN  HQFAMANNTR  LSTNSAFLKP240
VKHRKNLTIM  TGATVTKIMI  DKQEKTVDGV  MYEFEKGKEK  PAYAKRETIL  TTGAINNVKL300
LHLSGIGPKA  ELKKHNITTI  VDLPVGLNYQ  DQVSTGGLSF  AINDIAPVSE  IQVINDFKTW360
FQNRNGPLAS  RGVGQVSAFL  QLYESVNAPD  VELSLEGNFI  RSDKFMLTNI  SVHAAEETNL420
PLPYYNLVNI  HPILLRPKSK  GKVMLNKRNP  NYGRPIIQAN  LLKETEDLDT  LVDSIDIALQ480
LLQTKEMKRA  EIKLAPLDVF  PCDRLANRDQ  WNCITRHYTK  AVGNPIGTCR  MGENATDSVV540
DFNLRVHGVE  RLRIVDASVM  PTHVRGGIFA  PTMMIAEKAS  KMILKDWKES  NGLYNDR597

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help