Information for CAZyme ID: BAZ26387.1
Basic Information
GenBank ID | BAZ26387.1 |
Family | CBM2, GH5_1 |
Sequence Length | 602 |
UniProt ID | A0A1Z4Q842(100,100)![]() |
Average pLDDT? | 82.43 |
CAZy50 ID | 52164 |
CAZy50 Rep | Yes, BAZ26387.1 |
Structure Cluster | SC_CBM2_clus17, SC_GH5_clus238 |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 2005464 |
Kingdom | Bacteria |
Phylum | Cyanobacteriota |
Class | Cyanophyceae |
Order | Nostocales |
Family | Scytonemataceae |
Genus | Scytonema |
Species | Scytonema sp. NIES-4073 |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MRHIHQKKRK KIKYYNQLLI FSVVIVVFLM GIVAIPVRSQ VNVVAEMTIE LPLSTRGAKI | 60 |
LDAKGQQVLL RGVNWFGTET ETHVPHGLWK RDYKEILAQI KSLGYNLIRL PYSLEALRSP | 120 |
NINGIDFSIG SNKELEGKTP IQVMDLIIQE AQRQGLLILL DNHRLSDQRI SQLWYEDGFT | 180 |
EADWIDTWKM LAYRYKNQTN VIGADLKNEP HGKASWGTND LATDWRLAAE RAGNAILDVN | 240 |
PNWLIVVEGV EKNVPTQKLP KHWQGGNLEG VKRYPIRLSR RNKLVYSPHE YGPRVADQPW | 300 |
FWEPKFPKNL IDRWQIGFHH ISSQNIAPIL IGEFGGREVD TNSKEGIWQN EFVKYIKQKK | 360 |
LSFAYWSWNP NSADTGGILL DDWLSVDIPK QQLLSQLLPV NFSQLAPVQT SGGVGGSRGE | 420 |
INSKYPTGSP SGLQSPRSGN PPAALSHRPR GVYKIQNSTL GVSSLSPSSP SLPHSLTPSS | 480 |
PSSPSSPSSP SSPVRISSSS SQLAVTSDIY TNWQTGFCVS FKIMNQSNAK VNDWLLTFSM | 540 |
KQAAINNSWN GNFKPQGATQ YVVTPLDWGR VVEPNQVRDF GFCANKLGSD YQPTEVRVNT | 600 |
QR | 602 |
Predicted 3D structure by AlphaFold2 with pLDDT = 82.43 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
MRHIHQKKRK KIKYYNQLLI FSVVIVVFLM GIVAIPVRSQ VNVVAEMTIE LPLSTRGAKI | 60 |
LDAKGQQVLL RGVNWFGTET ETHVPHGLWK RDYKEILAQI KSLGYNLIRL PYSLEALRSP | 120 |
NINGIDFSIG SNKELEGKTP IQVMDLIIQE AQRQGLLILL DNHRLSDQRI SQLWYEDGFT | 180 |
EADWIDTWKM LAYRYKNQTN VIGADLKNEP HGKASWGTND LATDWRLAAE RAGNAILDVN | 240 |
PNWLIVVEGV EKNVPTQKLP KHWQGGNLEG VKRYPIRLSR RNKLVYSPHE YGPRVADQPW | 300 |
FWEPKFPKNL IDRWQIGFHH ISSQNIAPIL IGEFGGREVD TNSKEGIWQN EFVKYIKQKK | 360 |
LSFAYWSWNP NSADTGGILL DDWLSVDIPK QQLLSQLLPV NFSQLAPVQT SGGVGGSRGE | 420 |
INSKYPTGSP SGLQSPRSGN PPAALSHRPR GVYKIQNSTL GVSSLSPSSP SLPHSLTPSS | 480 |
PSSPSSPSSP SSPVRISSSS SQLAVTSDIY TNWQTGFCVS FKIMNQSNAK VNDWLLTFSM | 540 |
KQAAINNSWN GNFKPQGATQ YVVTPLDWGR VVEPNQVRDF GFCANKLGSD YQPTEVRVNT | 600 |
QR | 602 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.