CAZyme3D

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Entry ID

Information for CAZyme ID: BAZ26387.1

Basic Information

GenBank IDBAZ26387.1
FamilyCBM2, GH5_1
Sequence Length602
UniProt IDA0A1Z4Q842(100,100)Download
Average pLDDT?82.43
CAZy50 ID52164
CAZy50 RepYes, BAZ26387.1
Structure ClusterSC_CBM2_clus17, SC_GH5_clus238
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2005464
KingdomBacteria
PhylumCyanobacteriota
ClassCyanophyceae
OrderNostocales
FamilyScytonemataceae
GenusScytonema
SpeciesScytonema sp. NIES-4073

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRHIHQKKRK  KIKYYNQLLI  FSVVIVVFLM  GIVAIPVRSQ  VNVVAEMTIE  LPLSTRGAKI60
LDAKGQQVLL  RGVNWFGTET  ETHVPHGLWK  RDYKEILAQI  KSLGYNLIRL  PYSLEALRSP120
NINGIDFSIG  SNKELEGKTP  IQVMDLIIQE  AQRQGLLILL  DNHRLSDQRI  SQLWYEDGFT180
EADWIDTWKM  LAYRYKNQTN  VIGADLKNEP  HGKASWGTND  LATDWRLAAE  RAGNAILDVN240
PNWLIVVEGV  EKNVPTQKLP  KHWQGGNLEG  VKRYPIRLSR  RNKLVYSPHE  YGPRVADQPW300
FWEPKFPKNL  IDRWQIGFHH  ISSQNIAPIL  IGEFGGREVD  TNSKEGIWQN  EFVKYIKQKK360
LSFAYWSWNP  NSADTGGILL  DDWLSVDIPK  QQLLSQLLPV  NFSQLAPVQT  SGGVGGSRGE420
INSKYPTGSP  SGLQSPRSGN  PPAALSHRPR  GVYKIQNSTL  GVSSLSPSSP  SLPHSLTPSS480
PSSPSSPSSP  SSPVRISSSS  SQLAVTSDIY  TNWQTGFCVS  FKIMNQSNAK  VNDWLLTFSM540
KQAAINNSWN  GNFKPQGATQ  YVVTPLDWGR  VVEPNQVRDF  GFCANKLGSD  YQPTEVRVNT600
QR602

Predicted 3D structure by AlphaFold2 with pLDDT = 82.43 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MRHIHQKKRK  KIKYYNQLLI  FSVVIVVFLM  GIVAIPVRSQ  VNVVAEMTIE  LPLSTRGAKI60
LDAKGQQVLL  RGVNWFGTET  ETHVPHGLWK  RDYKEILAQI  KSLGYNLIRL  PYSLEALRSP120
NINGIDFSIG  SNKELEGKTP  IQVMDLIIQE  AQRQGLLILL  DNHRLSDQRI  SQLWYEDGFT180
EADWIDTWKM  LAYRYKNQTN  VIGADLKNEP  HGKASWGTND  LATDWRLAAE  RAGNAILDVN240
PNWLIVVEGV  EKNVPTQKLP  KHWQGGNLEG  VKRYPIRLSR  RNKLVYSPHE  YGPRVADQPW300
FWEPKFPKNL  IDRWQIGFHH  ISSQNIAPIL  IGEFGGREVD  TNSKEGIWQN  EFVKYIKQKK360
LSFAYWSWNP  NSADTGGILL  DDWLSVDIPK  QQLLSQLLPV  NFSQLAPVQT  SGGVGGSRGE420
INSKYPTGSP  SGLQSPRSGN  PPAALSHRPR  GVYKIQNSTL  GVSSLSPSSP  SLPHSLTPSS480
PSSPSSPSSP  SSPVRISSSS  SQLAVTSDIY  TNWQTGFCVS  FKIMNQSNAK  VNDWLLTFSM540
KQAAINNSWN  GNFKPQGATQ  YVVTPLDWGR  VVEPNQVRDF  GFCANKLGSD  YQPTEVRVNT600
QR602

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_1(62-377)+CBM2(505-601)

MRHIHQKKRK  KIKYYNQLLI  FSVVIVVFLM  GIVAIPVRSQ  VNVVAEMTIE  LPLSTRGAKI60
LDAKGQQVLL  RGVNWFGTET  ETHVPHGLWK  RDYKEILAQI  KSLGYNLIRL  PYSLEALRSP120
NINGIDFSIG  SNKELEGKTP  IQVMDLIIQE  AQRQGLLILL  DNHRLSDQRI  SQLWYEDGFT180
EADWIDTWKM  LAYRYKNQTN  VIGADLKNEP  HGKASWGTND  LATDWRLAAE  RAGNAILDVN240
PNWLIVVEGV  EKNVPTQKLP  KHWQGGNLEG  VKRYPIRLSR  RNKLVYSPHE  YGPRVADQPW300
FWEPKFPKNL  IDRWQIGFHH  ISSQNIAPIL  IGEFGGREVD  TNSKEGIWQN  EFVKYIKQKK360
LSFAYWSWNP  NSADTGGILL  DDWLSVDIPK  QQLLSQLLPV  NFSQLAPVQT  SGGVGGSRGE420
INSKYPTGSP  SGLQSPRSGN  PPAALSHRPR  GVYKIQNSTL  GVSSLSPSSP  SLPHSLTPSS480
PSSPSSPSSP  SSPVRISSSS  SQLAVTSDIY  TNWQTGFCVS  FKIMNQSNAK  VNDWLLTFSM540
KQAAINNSWN  GNFKPQGATQ  YVVTPLDWGR  VVEPNQVRDF  GFCANKLGSD  YQPTEVRVNT600
QR602

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help