Information for CAZyme ID: BAW87485.1
Basic Information
| GenBank ID | BAW87485.1 |
| Family | GH78 |
| Sequence Length | 536 |
| UniProt ID | A0A1Q2T784(100,100) |
| Average pLDDT? | 91.55 |
| CAZy50 ID | 61864 |
| CAZy50 Rep | Yes, BAW87485.1 |
| Structure Cluster | SC_GH78_clus37 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 1613 |
| Kingdom | Bacteria |
| Phylum | Bacillota |
| Class | Bacilli |
| Order | Lactobacillales |
| Family | Lactobacillaceae |
| Genus | Limosilactobacillus |
| Species | Limosilactobacillus fermentum |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MSYHFDNQGK RSQFKVDKTG SSNLKVNDEF YGKAQAIDPQ LKRQRIPILS ATYSHIGNQG | 60 |
| SRKNVDVDRL PRLSRNDVLV LDLGRHCVGH FNCQLITTGS HPDAPAVINV RFCEMEKELY | 120 |
| ASKDYEGWLP KGWIQEDAVR ILNFPWKKEF ERVACRYIKI SIIDTSQKYQ LVLKNPEFVS | 180 |
| ESSAGELNVN NEFCTNDSQL KQIDELSLAT LHSCMQTVFE DGPKRDRRLW IGDFRIQALT | 240 |
| DEVTFENFDI IKRCLYLFAS TANRRTGSLC ADIFSDGVEQ PDDLEMGDYT LLFVDVLANY | 300 |
| FGETKDKETL MGLYETAKRA VQYGLNQIDP SGIPNSDLVQ TVFLDWLADA NVSKKAATLG | 360 |
| IIIFALNRLI YLAEIVEDPQ IPELRQIQTK LTSLARDLYF DQQKGLFVSG KNSQINWPSQ | 420 |
| IWLVRANVFT KKQNQQLLRR SLDKLPMTFF VSPYLYGELC LTLCENDLVD LAVRLIKAYW | 480 |
| GKMIAAGAQT SWEVFSIQDA EYSPYGVNST LVHSYCHGWG CVPAYIFRKY LKPDGK | 536 |
Predicted 3D structure by AlphaFold2 with pLDDT = 91.55 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MSYHFDNQGK RSQFKVDKTG SSNLKVNDEF YGKAQAIDPQ LKRQRIPILS ATYSHIGNQG | 60 |
| SRKNVDVDRL PRLSRNDVLV LDLGRHCVGH FNCQLITTGS HPDAPAVINV RFCEMEKELY | 120 |
| ASKDYEGWLP KGWIQEDAVR ILNFPWKKEF ERVACRYIKI SIIDTSQKYQ LVLKNPEFVS | 180 |
| ESSAGELNVN NEFCTNDSQL KQIDELSLAT LHSCMQTVFE DGPKRDRRLW IGDFRIQALT | 240 |
| DEVTFENFDI IKRCLYLFAS TANRRTGSLC ADIFSDGVEQ PDDLEMGDYT LLFVDVLANY | 300 |
| FGETKDKETL MGLYETAKRA VQYGLNQIDP SGIPNSDLVQ TVFLDWLADA NVSKKAATLG | 360 |
| IIIFALNRLI YLAEIVEDPQ IPELRQIQTK LTSLARDLYF DQQKGLFVSG KNSQINWPSQ | 420 |
| IWLVRANVFT KKQNQQLLRR SLDKLPMTFF VSPYLYGELC LTLCENDLVD LAVRLIKAYW | 480 |
| GKMIAAGAQT SWEVFSIQDA EYSPYGVNST LVHSYCHGWG CVPAYIFRKY LKPDGK | 536 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.