CAZyme3D

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Entry ID

Information for CAZyme ID: BAT72045.1

Basic Information

GenBank IDBAT72045.1
FamilyGH23
Sequence Length454
UniProt IDA0A0S3QUN5(100,100)Download
Average pLDDT?85.37
CAZy50 ID79085
CAZy50 RepYes, BAT72045.1
Structure ClusterSC_GH23_clus430
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1298851
KingdomBacteria
PhylumThermosulfidibacterota
ClassThermosulfidibacteria
OrderThermosulfidibacterales
FamilyThermosulfidibacteraceae
GenusThermosulfidibacter
SpeciesThermosulfidibacter takaii

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRWYVSILIL  LLLAWRTSYG  LTLAERVSLL  GLCDLAIYEA  ECGDRDLVPY  ASDCLFREGK60
VKEALKLLKQ  RPDVAPYLVM  RLSADFQVSE  AKNSIDLVEL  SSKSVNYIKD  FLLNLNPEVA120
LDVKLSLLRI  YFYRQQYERF  FNFWDAFPEL  SEKKEARKLL  ALAYYRLGMW  DYALAVLSPF180
DDSFGIFWRW  KIKKKLGLPV  DEEEKRILEF  PITDFYRVLF  SLIKGILPYE  QLDSPEAYNV240
CKKVLLLQKA  GLDALSLEAL  KECMSQQEDW  FKTLPLLPNP  YYGVRLLYVD  KRLDWKTRLE300
YSYLKPYKGY  VRLASLAFGV  DEDLLFSVMR  QESLYNRFAL  SSSDAMGLMQ  IIPRTAVWIA360
ADNFGERADI  PKFFIPFFTI  KYGTWYLASL  LEDYPAFLAI  AAYNSGPTSL  NGWLKKNPWI420
EDASDVVEFY  YAGQTREYVR  KILVNYYVYK  FLLK454

Predicted 3D structure by AlphaFold2 with pLDDT = 85.37 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MRWYVSILIL  LLLAWRTSYG  LTLAERVSLL  GLCDLAIYEA  ECGDRDLVPY  ASDCLFREGK60
VKEALKLLKQ  RPDVAPYLVM  RLSADFQVSE  AKNSIDLVEL  SSKSVNYIKD  FLLNLNPEVA120
LDVKLSLLRI  YFYRQQYERF  FNFWDAFPEL  SEKKEARKLL  ALAYYRLGMW  DYALAVLSPF180
DDSFGIFWRW  KIKKKLGLPV  DEEEKRILEF  PITDFYRVLF  SLIKGILPYE  QLDSPEAYNV240
CKKVLLLQKA  GLDALSLEAL  KECMSQQEDW  FKTLPLLPNP  YYGVRLLYVD  KRLDWKTRLE300
YSYLKPYKGY  VRLASLAFGV  DEDLLFSVMR  QESLYNRFAL  SSSDAMGLMQ  IIPRTAVWIA360
ADNFGERADI  PKFFIPFFTI  KYGTWYLASL  LEDYPAFLAI  AAYNSGPTSL  NGWLKKNPWI420
EDASDVVEFY  YAGQTREYVR  KILVNYYVYK  FLLK454

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH23(323-447)

MRWYVSILIL  LLLAWRTSYG  LTLAERVSLL  GLCDLAIYEA  ECGDRDLVPY  ASDCLFREGK60
VKEALKLLKQ  RPDVAPYLVM  RLSADFQVSE  AKNSIDLVEL  SSKSVNYIKD  FLLNLNPEVA120
LDVKLSLLRI  YFYRQQYERF  FNFWDAFPEL  SEKKEARKLL  ALAYYRLGMW  DYALAVLSPF180
DDSFGIFWRW  KIKKKLGLPV  DEEEKRILEF  PITDFYRVLF  SLIKGILPYE  QLDSPEAYNV240
CKKVLLLQKA  GLDALSLEAL  KECMSQQEDW  FKTLPLLPNP  YYGVRLLYVD  KRLDWKTRLE300
YSYLKPYKGY  VRLASLAFGV  DEDLLFSVMR  QESLYNRFAL  SSSDAMGLMQ  IIPRTAVWIA360
ADNFGERADI  PKFFIPFFTI  KYGTWYLASL  LEDYPAFLAI  AAYNSGPTSL  NGWLKKNPWI420
EDASDVVEFY  YAGQTREYVR  KILVNYYVYK  FLLK454

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help