CAZyme3D

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Entry ID

Information for CAZyme ID: BAT71999.1

Basic Information

GenBank IDBAT71999.1
FamilyGH57
Sequence Length654
UniProt IDA0A0S3QUK1(100,100)Download
Average pLDDT?94.18
CAZy50 ID44606
CAZy50 RepYes, BAT71999.1
Structure ClusterSC_GH57_clus4
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1298851
KingdomBacteria
PhylumThermosulfidibacterota
ClassThermosulfidibacteria
OrderThermosulfidibacterales
FamilyThermosulfidibacteraceae
GenusThermosulfidibacter
SpeciesThermosulfidibacter takaii

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSAKLLFGIH  CHQPVDNFHW  VVKKAVERAY  LPFVKRVSEC  ERFKFAVHFS  GWLLEFIEKN60
YGELFDLLRL  LVKSGQVEFF  TGGFYEPVLV  SIPSKWRRYQ  IERLTGYIED  RFDTSPRGLW120
LTERVWDDSV  VVDLVKCNVE  YVVVDDYHFI  CAGFERKDLD  GFFLTESEGY  PLKIFPIDMK180
LRYLVPFKPA  KDAAEYLRAQ  TGVKTLFDDG  EKFGIWPGTY  DWVYKEGWLD  SFLTLVEEGQ240
IETQLFSECV  RNGTCKGLVY  LPTASYYEMG  EWTVPAERFV  ELQKLKEFLK  RQGLDEYVEK300
FVRGGIWKNF  FVKYPESNYM  HKRMLDLTSY  SCRKKAFLEE  LSKAQCNDAF  WHGIFGGLYL360
PNLRDNFWRF  LISANEIADK  SRKYMEVKDL  DYDGYEEILV  SRKSYYAVFS  PRYGGSLMEF420
SLKDRKFNLL  NVLARRIEGY  HLYEPGEGGD  GKGISTIHEM  KKEIAPQLKE  RLIEDWHSKF480
SFLAHFTHEL  NEEGFRKESF  VELSDFTVES  FQFTTGPDCL  EMSREGGIFS  DTKYGAYLKK540
RFSFEDTGFV  FEEEFETDYG  RSLVHLLEFN  LHFMDPERFT  VEHRGDCLIV  SDPVLGKRLV600
FEADRKFQCL  FYPIETVSQS  ESGVDVTVQG  YTIGLLFDLE  KRFTLALRFE  VGDV654

Predicted 3D structure by AlphaFold2 with pLDDT = 94.18 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MSAKLLFGIH  CHQPVDNFHW  VVKKAVERAY  LPFVKRVSEC  ERFKFAVHFS  GWLLEFIEKN60
YGELFDLLRL  LVKSGQVEFF  TGGFYEPVLV  SIPSKWRRYQ  IERLTGYIED  RFDTSPRGLW120
LTERVWDDSV  VVDLVKCNVE  YVVVDDYHFI  CAGFERKDLD  GFFLTESEGY  PLKIFPIDMK180
LRYLVPFKPA  KDAAEYLRAQ  TGVKTLFDDG  EKFGIWPGTY  DWVYKEGWLD  SFLTLVEEGQ240
IETQLFSECV  RNGTCKGLVY  LPTASYYEMG  EWTVPAERFV  ELQKLKEFLK  RQGLDEYVEK300
FVRGGIWKNF  FVKYPESNYM  HKRMLDLTSY  SCRKKAFLEE  LSKAQCNDAF  WHGIFGGLYL360
PNLRDNFWRF  LISANEIADK  SRKYMEVKDL  DYDGYEEILV  SRKSYYAVFS  PRYGGSLMEF420
SLKDRKFNLL  NVLARRIEGY  HLYEPGEGGD  GKGISTIHEM  KKEIAPQLKE  RLIEDWHSKF480
SFLAHFTHEL  NEEGFRKESF  VELSDFTVES  FQFTTGPDCL  EMSREGGIFS  DTKYGAYLKK540
RFSFEDTGFV  FEEEFETDYG  RSLVHLLEFN  LHFMDPERFT  VEHRGDCLIV  SDPVLGKRLV600
FEADRKFQCL  FYPIETVSQS  ESGVDVTVQG  YTIGLLFDLE  KRFTLALRFE  VGDV654

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH57(7-287)

MSAKLLFGIH  CHQPVDNFHW  VVKKAVERAY  LPFVKRVSEC  ERFKFAVHFS  GWLLEFIEKN60
YGELFDLLRL  LVKSGQVEFF  TGGFYEPVLV  SIPSKWRRYQ  IERLTGYIED  RFDTSPRGLW120
LTERVWDDSV  VVDLVKCNVE  YVVVDDYHFI  CAGFERKDLD  GFFLTESEGY  PLKIFPIDMK180
LRYLVPFKPA  KDAAEYLRAQ  TGVKTLFDDG  EKFGIWPGTY  DWVYKEGWLD  SFLTLVEEGQ240
IETQLFSECV  RNGTCKGLVY  LPTASYYEMG  EWTVPAERFV  ELQKLKEFLK  RQGLDEYVEK300
FVRGGIWKNF  FVKYPESNYM  HKRMLDLTSY  SCRKKAFLEE  LSKAQCNDAF  WHGIFGGLYL360
PNLRDNFWRF  LISANEIADK  SRKYMEVKDL  DYDGYEEILV  SRKSYYAVFS  PRYGGSLMEF420
SLKDRKFNLL  NVLARRIEGY  HLYEPGEGGD  GKGISTIHEM  KKEIAPQLKE  RLIEDWHSKF480
SFLAHFTHEL  NEEGFRKESF  VELSDFTVES  FQFTTGPDCL  EMSREGGIFS  DTKYGAYLKK540
RFSFEDTGFV  FEEEFETDYG  RSLVHLLEFN  LHFMDPERFT  VEHRGDCLIV  SDPVLGKRLV600
FEADRKFQCL  FYPIETVSQS  ESGVDVTVQG  YTIGLLFDLE  KRFTLALRFE  VGDV654

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help