CAZyme3D

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Entry ID

Information for CAZyme ID: BAT71917.1

Basic Information

GenBank IDBAT71917.1
FamilyGT4
Sequence Length361
UniProt IDA0A0S3QUA8(100,100)Download
Average pLDDT?92.08
CAZy50 ID125857
CAZy50 RepYes, BAT71917.1
Structure ClusterSC_GT4_clus864
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1298851
KingdomBacteria
PhylumThermosulfidibacterota
ClassThermosulfidibacteria
OrderThermosulfidibacterales
FamilyThermosulfidibacteraceae
GenusThermosulfidibacter
SpeciesThermosulfidibacter takaii

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLLKILQLVA  ITGLGGTGAS  VSNLSKVLAD  AGYQLWVGCY  PGSKVRERLE  GYPGINLITN60
LHMPANFSPV  KFVKDVTRLA  KLIKKEGIEV  IHSHSSPDSH  IATLLKILFP  RLVFIRSRHV120
PLTINDKLQC  SLADAVVAVS  YCVKGRMGLA  CAEKAVVIYD  GFNSKALRNS  LEKSSSVPVV180
RNIARYSPVK  GLEFFLRAIK  AVNEKMHLKA  FVVGRKKDDG  NRYYKKILDL  RRRLGLENVV240
FFKGFVDNIA  ALYADSDVVT  LTSIDSEGSS  RVSIEALHFK  VPVVAHKVCS  IAEIVVHGKT300
GLLVEPGDWK  SLAKGYLSSI  SYPALKKKLR  VNCEKRRFLY  SNKMLLDKHL  KLYQSRILGR360
L361

Predicted 3D structure by AlphaFold2 with pLDDT = 92.08 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MLLKILQLVA  ITGLGGTGAS  VSNLSKVLAD  AGYQLWVGCY  PGSKVRERLE  GYPGINLITN60
LHMPANFSPV  KFVKDVTRLA  KLIKKEGIEV  IHSHSSPDSH  IATLLKILFP  RLVFIRSRHV120
PLTINDKLQC  SLADAVVAVS  YCVKGRMGLA  CAEKAVVIYD  GFNSKALRNS  LEKSSSVPVV180
RNIARYSPVK  GLEFFLRAIK  AVNEKMHLKA  FVVGRKKDDG  NRYYKKILDL  RRRLGLENVV240
FFKGFVDNIA  ALYADSDVVT  LTSIDSEGSS  RVSIEALHFK  VPVVAHKVCS  IAEIVVHGKT300
GLLVEPGDWK  SLAKGYLSSI  SYPALKKKLR  VNCEKRRFLY  SNKMLLDKHL  KLYQSRILGR360
L361

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT4(177-327)

MLLKILQLVA  ITGLGGTGAS  VSNLSKVLAD  AGYQLWVGCY  PGSKVRERLE  GYPGINLITN60
LHMPANFSPV  KFVKDVTRLA  KLIKKEGIEV  IHSHSSPDSH  IATLLKILFP  RLVFIRSRHV120
PLTINDKLQC  SLADAVVAVS  YCVKGRMGLA  CAEKAVVIYD  GFNSKALRNS  LEKSSSVPVV180
RNIARYSPVK  GLEFFLRAIK  AVNEKMHLKA  FVVGRKKDDG  NRYYKKILDL  RRRLGLENVV240
FFKGFVDNIA  ALYADSDVVT  LTSIDSEGSS  RVSIEALHFK  VPVVAHKVCS  IAEIVVHGKT300
GLLVEPGDWK  SLAKGYLSSI  SYPALKKKLR  VNCEKRRFLY  SNKMLLDKHL  KLYQSRILGR360
L361

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help