Information for CAZyme ID: BAQ32915.1
Basic Information
| GenBank ID | BAQ32915.1 |
| Family | GT2 |
| Sequence Length | 443 |
| UniProt ID | A0A3E2C0H8(100,96.6) |
| Average pLDDT? | 87.51 |
| CAZy50 ID | 81742 |
| CAZy50 Rep | Yes, BAQ32915.1 |
| Structure Cluster | SC_GT2_clus453 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 585528 |
| Kingdom | Bacteria |
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Bifidobacteriales |
| Family | Bifidobacteriaceae |
| Genus | Gardnerella |
| Species | Gardnerella vaginalis |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MICAILPISV QWRRFMNPAI SVVVPAYNKE PYIKQCMDSL VNQTFKNIEI IVVDDASTDN | 60 |
| TLQILRDYEH KDSRVKIIVK DHNCGRHVAR KTGVQSTSGD YVLFVDADDE IDLKACEVLY | 120 |
| SYVTNNPADI LHFGVSIHPE GKSDEDFAYS YDQMYAQNNG DQTGDNIIKS TFSSDFPHWT | 180 |
| PWNVITALFK GDLVRDAFKK TVSTRLSKAE DAYEYFAIAA FAQTLKDLTA FRALKYHIGR | 240 |
| GISGRSKISV EKFTVEQRSV KDVVSAVYDF ANDFAKEPSM KSRKQTIEEA SRWFDNRGLK | 300 |
| IVKDEFLTRL KVEDFQEAIN AVIEAWGLER ACLIVLEELV DLMNQVVEGD CIIKHGSVCD | 360 |
| VLLNVYRNIK PDSFKDPQNT TYDKQVDLMS LHIMQVHQQK YEEEQKRLQI EAQKRYDAMP | 420 |
| VYKRFAKKIK NMVKNLTKSK NDK | 443 |
Predicted 3D structure by AlphaFold2 with pLDDT = 87.51 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MICAILPISV QWRRFMNPAI SVVVPAYNKE PYIKQCMDSL VNQTFKNIEI IVVDDASTDN | 60 |
| TLQILRDYEH KDSRVKIIVK DHNCGRHVAR KTGVQSTSGD YVLFVDADDE IDLKACEVLY | 120 |
| SYVTNNPADI LHFGVSIHPE GKSDEDFAYS YDQMYAQNNG DQTGDNIIKS TFSSDFPHWT | 180 |
| PWNVITALFK GDLVRDAFKK TVSTRLSKAE DAYEYFAIAA FAQTLKDLTA FRALKYHIGR | 240 |
| GISGRSKISV EKFTVEQRSV KDVVSAVYDF ANDFAKEPSM KSRKQTIEEA SRWFDNRGLK | 300 |
| IVKDEFLTRL KVEDFQEAIN AVIEAWGLER ACLIVLEELV DLMNQVVEGD CIIKHGSVCD | 360 |
| VLLNVYRNIK PDSFKDPQNT TYDKQVDLMS LHIMQVHQQK YEEEQKRLQI EAQKRYDAMP | 420 |
| VYKRFAKKIK NMVKNLTKSK NDK | 443 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.