CAZyme3D

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Entry ID

Information for CAZyme ID: BAN03701.1

Basic Information

GenBank IDBAN03701.1
FamilyGH36
Sequence Length708
UniProt IDA0A6C7EB47(100,100)Download
Average pLDDT?95.36
CAZy50 ID37655
CAZy50 RepYes, BAN03701.1
Structure ClusterSC_GH36_clus23
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1313172
KingdomBacteria
PhylumActinomycetota
ClassAcidimicrobiia
OrderAcidimicrobiales
FamilyIlumatobacteraceae
GenusIlumatobacter
SpeciesIlumatobacter coccineus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MDRGVMSKIV  RLVQEHAEVV  VDVSTGAPNI  VHWGAPLGDH  ADADAIARAL  DRPVVHGSLD60
TVAPITVVPE  HGSGFPGRPG  LNGRRGGGRS  WAPRFVTQTH  SHIGNTVIVD  AIDEVAGLAL120
TTNITLDHAL  RVNVTLENIG  DRRYSLDSLV  VTVPLPEHAD  ELLTFDGRWA  REFHPVRRDW180
TSGSMLVENR  RGRTSHEAVP  TVFAGRRGFG  EWHGDVWGVH  VAWSGNHQLY  AERLPDGRRY240
VQGGELLHPG  EVVLEPGDTY  TTPDVVGVHS  PDGLTAATWG  YHRSIRSLRV  HPTTPRPVLL300
NTWEAVYFDH  DIDRLRALAS  TAADLGIERF  VLDDGWFGSR  RDDRSGLGDW  FVSDDVYPDG360
LGPLIDHVTG  LGMEFGIWVE  PEMVNPDSDL  FRDHPDWALV  TPDYEPVLGR  RQLVLDLANP420
AAFDHVLGQL  DALLRDHRIS  FVKWDMNRDH  VHGSGVDGAA  GSRAQTLAVY  RLVDELRTRH480
PTVEIESCAS  GGGRIDHEIL  RRTERVWTSD  CNDALERQTI  QRGASMLIPP  EVMGAHIGPP540
RAHTTGRTQT  LSFRAATAMF  GHLGVEWDIT  RLSDDESAGL  RSVIAMYKEY  RGLLHSGDVV600
RFDTDEGYVA  HGVYAPDRSE  GIVSFAQLTT  TQSLMSPPLR  LPGLDAEESY  RVEHLRLPRE660
RWGSAGAQPG  WLADKGGVVL  TGRQLATHGI  RPPTLHPESA  VLFTLTRL708

Predicted 3D structure by AlphaFold2 with pLDDT = 95.36 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MDRGVMSKIV  RLVQEHAEVV  VDVSTGAPNI  VHWGAPLGDH  ADADAIARAL  DRPVVHGSLD60
TVAPITVVPE  HGSGFPGRPG  LNGRRGGGRS  WAPRFVTQTH  SHIGNTVIVD  AIDEVAGLAL120
TTNITLDHAL  RVNVTLENIG  DRRYSLDSLV  VTVPLPEHAD  ELLTFDGRWA  REFHPVRRDW180
TSGSMLVENR  RGRTSHEAVP  TVFAGRRGFG  EWHGDVWGVH  VAWSGNHQLY  AERLPDGRRY240
VQGGELLHPG  EVVLEPGDTY  TTPDVVGVHS  PDGLTAATWG  YHRSIRSLRV  HPTTPRPVLL300
NTWEAVYFDH  DIDRLRALAS  TAADLGIERF  VLDDGWFGSR  RDDRSGLGDW  FVSDDVYPDG360
LGPLIDHVTG  LGMEFGIWVE  PEMVNPDSDL  FRDHPDWALV  TPDYEPVLGR  RQLVLDLANP420
AAFDHVLGQL  DALLRDHRIS  FVKWDMNRDH  VHGSGVDGAA  GSRAQTLAVY  RLVDELRTRH480
PTVEIESCAS  GGGRIDHEIL  RRTERVWTSD  CNDALERQTI  QRGASMLIPP  EVMGAHIGPP540
RAHTTGRTQT  LSFRAATAMF  GHLGVEWDIT  RLSDDESAGL  RSVIAMYKEY  RGLLHSGDVV600
RFDTDEGYVA  HGVYAPDRSE  GIVSFAQLTT  TQSLMSPPLR  LPGLDAEESY  RVEHLRLPRE660
RWGSAGAQPG  WLADKGGVVL  TGRQLATHGI  RPPTLHPESA  VLFTLTRL708

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH36(10-655)

MDRGVMSKIV  RLVQEHAEVV  VDVSTGAPNI  VHWGAPLGDH  ADADAIARAL  DRPVVHGSLD60
TVAPITVVPE  HGSGFPGRPG  LNGRRGGGRS  WAPRFVTQTH  SHIGNTVIVD  AIDEVAGLAL120
TTNITLDHAL  RVNVTLENIG  DRRYSLDSLV  VTVPLPEHAD  ELLTFDGRWA  REFHPVRRDW180
TSGSMLVENR  RGRTSHEAVP  TVFAGRRGFG  EWHGDVWGVH  VAWSGNHQLY  AERLPDGRRY240
VQGGELLHPG  EVVLEPGDTY  TTPDVVGVHS  PDGLTAATWG  YHRSIRSLRV  HPTTPRPVLL300
NTWEAVYFDH  DIDRLRALAS  TAADLGIERF  VLDDGWFGSR  RDDRSGLGDW  FVSDDVYPDG360
LGPLIDHVTG  LGMEFGIWVE  PEMVNPDSDL  FRDHPDWALV  TPDYEPVLGR  RQLVLDLANP420
AAFDHVLGQL  DALLRDHRIS  FVKWDMNRDH  VHGSGVDGAA  GSRAQTLAVY  RLVDELRTRH480
PTVEIESCAS  GGGRIDHEIL  RRTERVWTSD  CNDALERQTI  QRGASMLIPP  EVMGAHIGPP540
RAHTTGRTQT  LSFRAATAMF  GHLGVEWDIT  RLSDDESAGL  RSVIAMYKEY  RGLLHSGDVV600
RFDTDEGYVA  HGVYAPDRSE  GIVSFAQLTT  TQSLMSPPLR  LPGLDAEESY  RVEHLRLPRE660
RWGSAGAQPG  WLADKGGVVL  TGRQLATHGI  RPPTLHPESA  VLFTLTRL708

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help