CAZyme3D

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Entry ID

Information for CAZyme ID: BAL55461.1

Basic Information

GenBank IDBAL55461.1
FamilyGT4
Sequence Length313
UniProt IDH5SH25(100,100)Download
Average pLDDT?93.47
CAZy50 ID150287
CAZy50 RepYes, BAL55461.1
Structure ClusterSC_GT4_clus813
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID236499
KingdomBacteria
PhylumCandidatus Bipolaricaulota
Class
Order
Family
Genus
Speciesuncultured Acetothermia bacterium

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRAQFRGKYG  GGIQNLYGIL  RWSLWLFHVH  CKLRPKVIHA  YDFDTIIPAL  IARSFIKCKV60
VYDIADWYAA  SRRVGWLGPL  LARAERLACR  KADLVIIAHE  ARLQQIGFVP  QKLLVLYNVP120
QDRYEVVSQA  GRHDYFVYVG  VLQPDRGLKQ  IITSVSNLGV  KLIIGGFGPE  EIYCKTMASM180
QENIEFLGKI  PYEQTLKLEA  SALAILALYD  PAWPNNRLAA  PNKLYEAMML  GRPLITTRET240
LVGQFVEQEK  IGIAVTYGDI  QELTEALKRL  RDNPEEGEEM  GRRARTLYET  RYSFSKQCEK300
LIEAYRELCP  TCF313

Predicted 3D structure by AlphaFold2 with pLDDT = 93.47 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MRAQFRGKYG  GGIQNLYGIL  RWSLWLFHVH  CKLRPKVIHA  YDFDTIIPAL  IARSFIKCKV60
VYDIADWYAA  SRRVGWLGPL  LARAERLACR  KADLVIIAHE  ARLQQIGFVP  QKLLVLYNVP120
QDRYEVVSQA  GRHDYFVYVG  VLQPDRGLKQ  IITSVSNLGV  KLIIGGFGPE  EIYCKTMASM180
QENIEFLGKI  PYEQTLKLEA  SALAILALYD  PAWPNNRLAA  PNKLYEAMML  GRPLITTRET240
LVGQFVEQEK  IGIAVTYGDI  QELTEALKRL  RDNPEEGEEM  GRRARTLYET  RYSFSKQCEK300
LIEAYRELCP  TCF313

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT4(132-281)

MRAQFRGKYG  GGIQNLYGIL  RWSLWLFHVH  CKLRPKVIHA  YDFDTIIPAL  IARSFIKCKV60
VYDIADWYAA  SRRVGWLGPL  LARAERLACR  KADLVIIAHE  ARLQQIGFVP  QKLLVLYNVP120
QDRYEVVSQA  GRHDYFVYVG  VLQPDRGLKQ  IITSVSNLGV  KLIIGGFGPE  EIYCKTMASM180
QENIEFLGKI  PYEQTLKLEA  SALAILALYD  PAWPNNRLAA  PNKLYEAMML  GRPLITTRET240
LVGQFVEQEK  IGIAVTYGDI  QELTEALKRL  RDNPEEGEEM  GRRARTLYET  RYSFSKQCEK300
LIEAYRELCP  TCF313

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help