Information for CAZyme ID: BAK60933.1
Basic Information
GenBank ID | BAK60933.1 |
Family | GT35 |
Sequence Length | 800 |
UniProt ID | F9VF32(100,100)![]() |
Average pLDDT? | 95.43 |
CAZy50 ID | 25692 |
CAZy50 Rep | No, ATF73135.1 |
Structure Cluster | - |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 420890 |
Kingdom | Bacteria |
Phylum | Bacillota |
Class | Bacilli |
Order | Lactobacillales |
Family | Streptococcaceae |
Genus | Lactococcus |
Species | Lactococcus garvieae |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MKLSKTQFKK DFEKRLTSKF ATDVSKAGVT ETFATLSSVV KHYYTQIWQA DNQYKDEVQQ | 60 |
KQTYYFSIEF LPGKMLKSNL LNLGILATVR DGLADLGIDL EKVAQIEPDM AIGNGGLGRL | 120 |
ASCFMDSAAS TGFPVNGNGI RYRYGLFKQK IIDGYQVELP DSWLNNVNPW EVRRADKAIE | 180 |
VTFGGEAWLE EDEAGHLTPR YRNQERVLAV PYDTPMVGFE NTRVNNMCLW HSEVPQDLDV | 240 |
KFQNMEYMNQ TSMLSAELYP DDSNYDGRLL RLKQEYFFVS AGLQRIIRHY KANNDAPLIQ | 300 |
IADYIAVHIN DTHPALCVPE FMRLLLDENG LSWTQAWDIT VKVMSYTNHT ILSEALEKWP | 360 |
EEMVQMLLPR IYQIIKEIDN RRTEELTPLV GAEVVQKTSI VKDGQIHMAS LAIIGSHSTN | 420 |
GVAQLHSDIL KDVELHDFYQ LYPERFNNKT NGIADRRWLQ IANEGLSNLI DEKIGKAWRH | 480 |
DLKELEALKA FYEDEATLKE LLAVKFQNKK ALALLIKEKN GIEVNPDAIF DVQVKRLHAY | 540 |
KRQLLNLLHI LKLYFDIKNQ PHIEMVPRVF IFGAKAAPGY HYAKSIIKAI NEIADMINSD | 600 |
PVVKDRIKVI FMENYNVSLA ESIIPAADVG EQISLASKEA SGTSNMKFML NGALTMATLD | 660 |
GANIEIKEAC GDENIFIFGL TKDKVYEYYK NGNYNARDIY EQNPIVHRIL NAFVDGTIPN | 720 |
ITNEGPEIFD SLTAFNDEYF LLRDFNDYVR AQKDLETLYR NPKAWAQASL MNIATSGIFS | 780 |
SDRTIRQYAE EIWFVKEKNE | 800 |
Predicted 3D structure by AlphaFold2 with pLDDT = 95.43 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : GT35(93-795)
MKLSKTQFKK DFEKRLTSKF ATDVSKAGVT ETFATLSSVV KHYYTQIWQA DNQYKDEVQQ | 60 |
KQTYYFSIEF LPGKMLKSNL LNLGILATVR DGLADLGIDL EKVAQIEPDM AIGNGGLGRL | 120 |
ASCFMDSAAS TGFPVNGNGI RYRYGLFKQK IIDGYQVELP DSWLNNVNPW EVRRADKAIE | 180 |
VTFGGEAWLE EDEAGHLTPR YRNQERVLAV PYDTPMVGFE NTRVNNMCLW HSEVPQDLDV | 240 |
KFQNMEYMNQ TSMLSAELYP DDSNYDGRLL RLKQEYFFVS AGLQRIIRHY KANNDAPLIQ | 300 |
IADYIAVHIN DTHPALCVPE FMRLLLDENG LSWTQAWDIT VKVMSYTNHT ILSEALEKWP | 360 |
EEMVQMLLPR IYQIIKEIDN RRTEELTPLV GAEVVQKTSI VKDGQIHMAS LAIIGSHSTN | 420 |
GVAQLHSDIL KDVELHDFYQ LYPERFNNKT NGIADRRWLQ IANEGLSNLI DEKIGKAWRH | 480 |
DLKELEALKA FYEDEATLKE LLAVKFQNKK ALALLIKEKN GIEVNPDAIF DVQVKRLHAY | 540 |
KRQLLNLLHI LKLYFDIKNQ PHIEMVPRVF IFGAKAAPGY HYAKSIIKAI NEIADMINSD | 600 |
PVVKDRIKVI FMENYNVSLA ESIIPAADVG EQISLASKEA SGTSNMKFML NGALTMATLD | 660 |
GANIEIKEAC GDENIFIFGL TKDKVYEYYK NGNYNARDIY EQNPIVHRIL NAFVDGTIPN | 720 |
ITNEGPEIFD SLTAFNDEYF LLRDFNDYVR AQKDLETLYR NPKAWAQASL MNIATSGIFS | 780 |
SDRTIRQYAE EIWFVKEKNE | 800 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.