CAZyme3D

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Entry ID

Information for CAZyme ID: BAK60933.1

Basic Information

GenBank IDBAK60933.1
FamilyGT35
Sequence Length800
UniProt IDF9VF32(100,100)Download
Average pLDDT?95.43
CAZy50 ID25692
CAZy50 RepNo, ATF73135.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID420890
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyStreptococcaceae
GenusLactococcus
SpeciesLactococcus garvieae

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKLSKTQFKK  DFEKRLTSKF  ATDVSKAGVT  ETFATLSSVV  KHYYTQIWQA  DNQYKDEVQQ60
KQTYYFSIEF  LPGKMLKSNL  LNLGILATVR  DGLADLGIDL  EKVAQIEPDM  AIGNGGLGRL120
ASCFMDSAAS  TGFPVNGNGI  RYRYGLFKQK  IIDGYQVELP  DSWLNNVNPW  EVRRADKAIE180
VTFGGEAWLE  EDEAGHLTPR  YRNQERVLAV  PYDTPMVGFE  NTRVNNMCLW  HSEVPQDLDV240
KFQNMEYMNQ  TSMLSAELYP  DDSNYDGRLL  RLKQEYFFVS  AGLQRIIRHY  KANNDAPLIQ300
IADYIAVHIN  DTHPALCVPE  FMRLLLDENG  LSWTQAWDIT  VKVMSYTNHT  ILSEALEKWP360
EEMVQMLLPR  IYQIIKEIDN  RRTEELTPLV  GAEVVQKTSI  VKDGQIHMAS  LAIIGSHSTN420
GVAQLHSDIL  KDVELHDFYQ  LYPERFNNKT  NGIADRRWLQ  IANEGLSNLI  DEKIGKAWRH480
DLKELEALKA  FYEDEATLKE  LLAVKFQNKK  ALALLIKEKN  GIEVNPDAIF  DVQVKRLHAY540
KRQLLNLLHI  LKLYFDIKNQ  PHIEMVPRVF  IFGAKAAPGY  HYAKSIIKAI  NEIADMINSD600
PVVKDRIKVI  FMENYNVSLA  ESIIPAADVG  EQISLASKEA  SGTSNMKFML  NGALTMATLD660
GANIEIKEAC  GDENIFIFGL  TKDKVYEYYK  NGNYNARDIY  EQNPIVHRIL  NAFVDGTIPN720
ITNEGPEIFD  SLTAFNDEYF  LLRDFNDYVR  AQKDLETLYR  NPKAWAQASL  MNIATSGIFS780
SDRTIRQYAE  EIWFVKEKNE  800

Predicted 3D structure by AlphaFold2 with pLDDT = 95.43 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT35(93-795)

MKLSKTQFKK  DFEKRLTSKF  ATDVSKAGVT  ETFATLSSVV  KHYYTQIWQA  DNQYKDEVQQ60
KQTYYFSIEF  LPGKMLKSNL  LNLGILATVR  DGLADLGIDL  EKVAQIEPDM  AIGNGGLGRL120
ASCFMDSAAS  TGFPVNGNGI  RYRYGLFKQK  IIDGYQVELP  DSWLNNVNPW  EVRRADKAIE180
VTFGGEAWLE  EDEAGHLTPR  YRNQERVLAV  PYDTPMVGFE  NTRVNNMCLW  HSEVPQDLDV240
KFQNMEYMNQ  TSMLSAELYP  DDSNYDGRLL  RLKQEYFFVS  AGLQRIIRHY  KANNDAPLIQ300
IADYIAVHIN  DTHPALCVPE  FMRLLLDENG  LSWTQAWDIT  VKVMSYTNHT  ILSEALEKWP360
EEMVQMLLPR  IYQIIKEIDN  RRTEELTPLV  GAEVVQKTSI  VKDGQIHMAS  LAIIGSHSTN420
GVAQLHSDIL  KDVELHDFYQ  LYPERFNNKT  NGIADRRWLQ  IANEGLSNLI  DEKIGKAWRH480
DLKELEALKA  FYEDEATLKE  LLAVKFQNKK  ALALLIKEKN  GIEVNPDAIF  DVQVKRLHAY540
KRQLLNLLHI  LKLYFDIKNQ  PHIEMVPRVF  IFGAKAAPGY  HYAKSIIKAI  NEIADMINSD600
PVVKDRIKVI  FMENYNVSLA  ESIIPAADVG  EQISLASKEA  SGTSNMKFML  NGALTMATLD660
GANIEIKEAC  GDENIFIFGL  TKDKVYEYYK  NGNYNARDIY  EQNPIVHRIL  NAFVDGTIPN720
ITNEGPEIFD  SLTAFNDEYF  LLRDFNDYVR  AQKDLETLYR  NPKAWAQASL  MNIATSGIFS780
SDRTIRQYAE  EIWFVKEKNE  800

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help