CAZyme3D

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Entry ID

Information for CAZyme ID: ATF73135.1

Basic Information

GenBank IDATF73135.1
FamilyGT35
Sequence Length817
UniProt IDA0A291DQ34(100,100)Download
Average pLDDT?93.75
CAZy50 ID25692
CAZy50 RepYes, ATF73135.1
Structure ClusterSC_GT35_clus3
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2060307
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyEnterococcaceae
GenusEnterococcus
SpeciesEnterococcus sp. FDAARGOS_375

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTKERLRELL  ETNVHELFAI  EIDEASPQEL  FQALANVVKQ  LYSEDWRQTR  KNLLLEDQKQ60
AYYFSIEFLP  GKMLKSNLLN  MQLLEQAEAV  FEELGVSLDY  VAETEKDMAL  GNGGLGRLAS120
CFMDSLASLG  LPGNGNGIRY  RYGLFKQKFI  DGHQVELPDD  WLRSGNVWEV  RKESKAVPIR180
FGGQVYLVTG  EDGKLAPVYE  GGFTWRAVPY  DTAMVGYQNH  HLNTLRLWSV  EVPAEDEAHY240
ATLESRQALE  NLTAVLYPDD  SNETGKRTRL  MQEYFFVSAG  IQSIVRYYKK  LNLPLAMMSE300
RVAIHINDTH  PALCVPELMR  ILVDEEGLAW  EQAWSITVKV  MSYTNHTIMA  EALEKWPVRM360
IEEVLPRMDQ  IIKEIDRRFV  EGMQGVHPQA  LLDRTRIIID  DQVHMAHLAI  IGSHSVNGVA420
KLHSDLLKSV  VLHDFYLIYP  ARFNNKTNGI  AQRRWLQLAN  QPLAKVLDQS  IGTSWRNDPL480
DLQLLKNYYE  DETVLQQIAE  AKMSNKRALA  RYIQHTTGVT  VDPTAIFDVQ  IKRLHAYKRQ540
LLNLMHILKL  YFEVKDDPTA  TFHPRVFIFG  AKAAPSYHYA  KSIIKVINEV  ANLINHDESI600
NDKIKVVFLE  NYNVSLAEKI  IPAADVSEQI  SLASKEASGT  SNMKLMLNGA  VTIATLDGAN660
IEIRDAIGDE  NIAIFGLTEE  EVYQYYAQRN  YSAYAYYESD  PVLQRVVNAF  IDGTIPNIQV720
EGREIFDSLL  KYNDEYFLLR  DFHAYCDAQH  RVDIAYQDTH  RWQKISLMNI  ANAGKFSADE780
TVRNYAADIW  QIDPLFAHIK  EPNAASLTES  VPPLGNS817

Predicted 3D structure by AlphaFold2 with pLDDT = 93.75 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MTKERLRELL  ETNVHELFAI  EIDEASPQEL  FQALANVVKQ  LYSEDWRQTR  KNLLLEDQKQ60
AYYFSIEFLP  GKMLKSNLLN  MQLLEQAEAV  FEELGVSLDY  VAETEKDMAL  GNGGLGRLAS120
CFMDSLASLG  LPGNGNGIRY  RYGLFKQKFI  DGHQVELPDD  WLRSGNVWEV  RKESKAVPIR180
FGGQVYLVTG  EDGKLAPVYE  GGFTWRAVPY  DTAMVGYQNH  HLNTLRLWSV  EVPAEDEAHY240
ATLESRQALE  NLTAVLYPDD  SNETGKRTRL  MQEYFFVSAG  IQSIVRYYKK  LNLPLAMMSE300
RVAIHINDTH  PALCVPELMR  ILVDEEGLAW  EQAWSITVKV  MSYTNHTIMA  EALEKWPVRM360
IEEVLPRMDQ  IIKEIDRRFV  EGMQGVHPQA  LLDRTRIIID  DQVHMAHLAI  IGSHSVNGVA420
KLHSDLLKSV  VLHDFYLIYP  ARFNNKTNGI  AQRRWLQLAN  QPLAKVLDQS  IGTSWRNDPL480
DLQLLKNYYE  DETVLQQIAE  AKMSNKRALA  RYIQHTTGVT  VDPTAIFDVQ  IKRLHAYKRQ540
LLNLMHILKL  YFEVKDDPTA  TFHPRVFIFG  AKAAPSYHYA  KSIIKVINEV  ANLINHDESI600
NDKIKVVFLE  NYNVSLAEKI  IPAADVSEQI  SLASKEASGT  SNMKLMLNGA  VTIATLDGAN660
IEIRDAIGDE  NIAIFGLTEE  EVYQYYAQRN  YSAYAYYESD  PVLQRVVNAF  IDGTIPNIQV720
EGREIFDSLL  KYNDEYFLLR  DFHAYCDAQH  RVDIAYQDTH  RWQKISLMNI  ANAGKFSADE780
TVRNYAADIW  QIDPLFAHIK  EPNAASLTES  VPPLGNS817

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT35(92-792)

MTKERLRELL  ETNVHELFAI  EIDEASPQEL  FQALANVVKQ  LYSEDWRQTR  KNLLLEDQKQ60
AYYFSIEFLP  GKMLKSNLLN  MQLLEQAEAV  FEELGVSLDY  VAETEKDMAL  GNGGLGRLAS120
CFMDSLASLG  LPGNGNGIRY  RYGLFKQKFI  DGHQVELPDD  WLRSGNVWEV  RKESKAVPIR180
FGGQVYLVTG  EDGKLAPVYE  GGFTWRAVPY  DTAMVGYQNH  HLNTLRLWSV  EVPAEDEAHY240
ATLESRQALE  NLTAVLYPDD  SNETGKRTRL  MQEYFFVSAG  IQSIVRYYKK  LNLPLAMMSE300
RVAIHINDTH  PALCVPELMR  ILVDEEGLAW  EQAWSITVKV  MSYTNHTIMA  EALEKWPVRM360
IEEVLPRMDQ  IIKEIDRRFV  EGMQGVHPQA  LLDRTRIIID  DQVHMAHLAI  IGSHSVNGVA420
KLHSDLLKSV  VLHDFYLIYP  ARFNNKTNGI  AQRRWLQLAN  QPLAKVLDQS  IGTSWRNDPL480
DLQLLKNYYE  DETVLQQIAE  AKMSNKRALA  RYIQHTTGVT  VDPTAIFDVQ  IKRLHAYKRQ540
LLNLMHILKL  YFEVKDDPTA  TFHPRVFIFG  AKAAPSYHYA  KSIIKVINEV  ANLINHDESI600
NDKIKVVFLE  NYNVSLAEKI  IPAADVSEQI  SLASKEASGT  SNMKLMLNGA  VTIATLDGAN660
IEIRDAIGDE  NIAIFGLTEE  EVYQYYAQRN  YSAYAYYESD  PVLQRVVNAF  IDGTIPNIQV720
EGREIFDSLL  KYNDEYFLLR  DFHAYCDAQH  RVDIAYQDTH  RWQKISLMNI  ANAGKFSADE780
TVRNYAADIW  QIDPLFAHIK  EPNAASLTES  VPPLGNS817

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help