CAZyme3D

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Entry ID

Information for CAZyme ID: BAF40429.1

Basic Information

GenBank IDBAF40429.1
FamilyCBM2, GH18
Sequence Length401
UniProt IDA0ZSK1(100,100)Download
Average pLDDT?91.95
CAZy50 ID98325
CAZy50 RepYes, BAF40429.1
Structure ClusterSC_GH18_clus219
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID554065
KingdomEukaryota
PhylumChlorophyta
ClassTrebouxiophyceae
OrderChlorellales
FamilyChlorellaceae
GenusChlorella
SpeciesChlorella variabilis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

SFEASFSIKN  SNAFYILNWR  LHFSLVGWSS  FTWGPSDTDL  KYAGTKTNAQ  VVLTPKEWLR60
EIPPGTTLSI  SFGGQGVAPS  AIVFEQILPL  LDPDHDISLS  TRGAFPQKLF  APFVDATLYP120
TPRLLDAYEA  TGQKWFTLAF  ITADLRTGAR  LGRVIPLWKQ  YFMDQIRDIR  LLGGDCIVSF180
GGAAGQEQAQ  VRVDEDMLLK  DYQTIVDLYK  LRWIDFDIEG  GAVLEMASVQ  RRHRVLKRLQ240
DANPGLVVSF  TLPVLPVGLT  ADGVNLLRDA  KAKGVRLDVL  NIMTMDYGDS  AAPNPRGQMG300
DYAIQAAVNT  RAQAQSVGYD  DTKIGNTPMI  GLNDVESEIF  YLDDARKVGA  WAKATPWLRW360
TAFWSVGRDK  WNPAETYVSI  HSSSIPQEPF  EFTRIFKSFA  S401

Predicted 3D structure by AlphaFold2 with pLDDT = 91.95 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

SFEASFSIKN  SNAFYILNWR  LHFSLVGWSS  FTWGPSDTDL  KYAGTKTNAQ  VVLTPKEWLR60
EIPPGTTLSI  SFGGQGVAPS  AIVFEQILPL  LDPDHDISLS  TRGAFPQKLF  APFVDATLYP120
TPRLLDAYEA  TGQKWFTLAF  ITADLRTGAR  LGRVIPLWKQ  YFMDQIRDIR  LLGGDCIVSF180
GGAAGQEQAQ  VRVDEDMLLK  DYQTIVDLYK  LRWIDFDIEG  GAVLEMASVQ  RRHRVLKRLQ240
DANPGLVVSF  TLPVLPVGLT  ADGVNLLRDA  KAKGVRLDVL  NIMTMDYGDS  AAPNPRGQMG300
DYAIQAAVNT  RAQAQSVGYD  DTKIGNTPMI  GLNDVESEIF  YLDDARKVGA  WAKATPWLRW360
TAFWSVGRDK  WNPAETYVSI  HSSSIPQEPF  EFTRIFKSFA  S401

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM2(2-77)+GH18(149-307)

SFEASFSIKN  SNAFYILNWR  LHFSLVGWSS  FTWGPSDTDL  KYAGTKTNAQ  VVLTPKEWLR60
EIPPGTTLSI  SFGGQGVAPS  AIVFEQILPL  LDPDHDISLS  TRGAFPQKLF  APFVDATLYP120
TPRLLDAYEA  TGQKWFTLAF  ITADLRTGAR  LGRVIPLWKQ  YFMDQIRDIR  LLGGDCIVSF180
GGAAGQEQAQ  VRVDEDMLLK  DYQTIVDLYK  LRWIDFDIEG  GAVLEMASVQ  RRHRVLKRLQ240
DANPGLVVSF  TLPVLPVGLT  ADGVNLLRDA  KAKGVRLDVL  NIMTMDYGDS  AAPNPRGQMG300
DYAIQAAVNT  RAQAQSVGYD  DTKIGNTPMI  GLNDVESEIF  YLDDARKVGA  WAKATPWLRW360
TAFWSVGRDK  WNPAETYVSI  HSSSIPQEPF  EFTRIFKSFA  S401

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help