CAZyme3D

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Entry ID

Information for CAZyme ID: BAF39986.1

Basic Information

GenBank IDBAF39986.1
FamilyGH51
Sequence Length518
UniProt IDA1A2Q3(100,100)Download
Average pLDDT?95.80
CAZy50 ID65153
CAZy50 RepYes, BAF39986.1
Structure ClusterSC_GH51_clus17
EC Number(s)3.2.1.55
Substrates(s)arabinan

Taxonomy

Tax ID367928
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderBifidobacteriales
FamilyBifidobacteriaceae
GenusBifidobacterium
SpeciesBifidobacterium adolescentis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MVVCIDPNST  IGRIDPKLHG  QFIEFLGECI  DEGLWVGEDS  PIENERGYRK  ATLDALRALR60
PPVIRWPGGC  YADTYHWRDG  VGPQSERKTT  FNENFATYEL  DDHSFGTDEF  LRLCEMLGAE120
PWININMLSG  TVAEMKDWME  YCNRAQPTDL  AKEREANGHK  APYGVKYWGI  GNEVWAGGGT180
MTPRTYLNEY  RRFASAMPSF  TTDVFAPTPM  YAIASGPDGN  KPRERVQWTQ  DFFRGLAEYR240
QPNIDGYDLH  FYNWNVDNDA  DTPTRFDEDG  WNAVIEGCLE  LEDILRDQWR  LMNDGLALIH300
EPEVAMDSKL  AHVDLIIGEW  GNWHKTAFFA  RPALKQQVTM  RDAITTALTL  DLLQRNCDKV360
TMACNAQTIN  VLNSLILTEG  DRTILTPNYD  VFMMYKAHRG  MTALDVARND  SEDSAVYTFA420
SRNEDGTQLL  INLTNAHMND  GAEVRLHLPC  GAQVDSMETL  ASEDPHDCNT  VEHSDLVRTH480
AVDVDSAVSV  HESAGGAELT  VTLPAASVSA  LHVTIRQR518

Predicted 3D structure by AlphaFold2 with pLDDT = 95.80 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MVVCIDPNST  IGRIDPKLHG  QFIEFLGECI  DEGLWVGEDS  PIENERGYRK  ATLDALRALR60
PPVIRWPGGC  YADTYHWRDG  VGPQSERKTT  FNENFATYEL  DDHSFGTDEF  LRLCEMLGAE120
PWININMLSG  TVAEMKDWME  YCNRAQPTDL  AKEREANGHK  APYGVKYWGI  GNEVWAGGGT180
MTPRTYLNEY  RRFASAMPSF  TTDVFAPTPM  YAIASGPDGN  KPRERVQWTQ  DFFRGLAEYR240
QPNIDGYDLH  FYNWNVDNDA  DTPTRFDEDG  WNAVIEGCLE  LEDILRDQWR  LMNDGLALIH300
EPEVAMDSKL  AHVDLIIGEW  GNWHKTAFFA  RPALKQQVTM  RDAITTALTL  DLLQRNCDKV360
TMACNAQTIN  VLNSLILTEG  DRTILTPNYD  VFMMYKAHRG  MTALDVARND  SEDSAVYTFA420
SRNEDGTQLL  INLTNAHMND  GAEVRLHLPC  GAQVDSMETL  ASEDPHDCNT  VEHSDLVRTH480
AVDVDSAVSV  HESAGGAELT  VTLPAASVSA  LHVTIRQR518

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH51(4-514)

MVVCIDPNST  IGRIDPKLHG  QFIEFLGECI  DEGLWVGEDS  PIENERGYRK  ATLDALRALR60
PPVIRWPGGC  YADTYHWRDG  VGPQSERKTT  FNENFATYEL  DDHSFGTDEF  LRLCEMLGAE120
PWININMLSG  TVAEMKDWME  YCNRAQPTDL  AKEREANGHK  APYGVKYWGI  GNEVWAGGGT180
MTPRTYLNEY  RRFASAMPSF  TTDVFAPTPM  YAIASGPDGN  KPRERVQWTQ  DFFRGLAEYR240
QPNIDGYDLH  FYNWNVDNDA  DTPTRFDEDG  WNAVIEGCLE  LEDILRDQWR  LMNDGLALIH300
EPEVAMDSKL  AHVDLIIGEW  GNWHKTAFFA  RPALKQQVTM  RDAITTALTL  DLLQRNCDKV360
TMACNAQTIN  VLNSLILTEG  DRTILTPNYD  VFMMYKAHRG  MTALDVARND  SEDSAVYTFA420
SRNEDGTQLL  INLTNAHMND  GAEVRLHLPC  GAQVDSMETL  ASEDPHDCNT  VEHSDLVRTH480
AVDVDSAVSV  HESAGGAELT  VTLPAASVSA  LHVTIRQR518

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help