CAZyme3D

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Entry ID

Information for CAZyme ID: BAF02568.1

Basic Information

GenBank IDBAF02568.1
FamilyCBM9, GH18
Sequence Length649
UniProt IDQ0WY12(100,100)Download
Average pLDDT?90.30
CAZy50 ID45321
CAZy50 RepYes, BAF02568.1
Structure ClusterSC_CBM9_clus9, SC_GH18_clus254
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID77133
KingdomBacteria
Phylum
Class
Order
Family
Genus
Speciesuncultured bacterium

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLKIKILVIT  LILALCLEGC  TSKEAATALP  TALQPKGKMV  IGYYPSWATA  RGVPLSSAPT60
QKLTHINYAF  SNVSVSGECV  LGDPAADVDR  VYAANESVTG  SDDNNTSDFH  GNFNQLLELK120
KQNPQLKVLI  SVGGWNWSGN  FSNAAKDETS  RQRFASSCID  LYLKQYAGVF  DGIDIDWEYP180
VSGGLTNGSP  DDTANFTLLL  YELRLQLDAL  GETNGEHYLL  TIAAPVGPGS  IRNLDLPGIA240
VAVDWINLMT  YDFHGTWDAT  TNFNAPLFRT  VNDPADAALN  ADAAVQTYLI  EGVPAAKLVM300
GVPFYGRGWS  GVTDVDHGLY  QSATGAAPGT  HEAGSFEYND  IRNRYLPTWQ  YYWNQEANVP360
WLYDSASQTF  ISFDDARSLE  AKAGYVKDQE  LAGVMIWEIS  QGDQSLVDGI  YAGFENGGPA420
KPTLMPKELV  PRPFEANLHE  VNNINVDGQL  TDWSAAPDFV  LDQESQVVFT  AAANSWSGPE480
DLSANAWAGW  TAEGLYFAFQ  VTDDQHVQSA  ADNTLWHGDH  MEIQLDTQMD  EDYDNPGMND540
DDFQIGLSLG  DLAQVPSVGY  AWFNGAFTPG  EIQGLEMAYT  MTEAGYILEA  FIPLEALSGI600
TLAEGAVFGM  NISPSDSDTS  GGSQETMLST  SSIRTYADPR  TFGKITLVK649

Predicted 3D structure by AlphaFold2 with pLDDT = 90.30 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MLKIKILVIT  LILALCLEGC  TSKEAATALP  TALQPKGKMV  IGYYPSWATA  RGVPLSSAPT60
QKLTHINYAF  SNVSVSGECV  LGDPAADVDR  VYAANESVTG  SDDNNTSDFH  GNFNQLLELK120
KQNPQLKVLI  SVGGWNWSGN  FSNAAKDETS  RQRFASSCID  LYLKQYAGVF  DGIDIDWEYP180
VSGGLTNGSP  DDTANFTLLL  YELRLQLDAL  GETNGEHYLL  TIAAPVGPGS  IRNLDLPGIA240
VAVDWINLMT  YDFHGTWDAT  TNFNAPLFRT  VNDPADAALN  ADAAVQTYLI  EGVPAAKLVM300
GVPFYGRGWS  GVTDVDHGLY  QSATGAAPGT  HEAGSFEYND  IRNRYLPTWQ  YYWNQEANVP360
WLYDSASQTF  ISFDDARSLE  AKAGYVKDQE  LAGVMIWEIS  QGDQSLVDGI  YAGFENGGPA420
KPTLMPKELV  PRPFEANLHE  VNNINVDGQL  TDWSAAPDFV  LDQESQVVFT  AAANSWSGPE480
DLSANAWAGW  TAEGLYFAFQ  VTDDQHVQSA  ADNTLWHGDH  MEIQLDTQMD  EDYDNPGMND540
DDFQIGLSLG  DLAQVPSVGY  AWFNGAFTPG  EIQGLEMAYT  MTEAGYILEA  FIPLEALSGI600
TLAEGAVFGM  NISPSDSDTS  GGSQETMLST  SSIRTYADPR  TFGKITLVK649

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH18(38-403)+CBM9(446-647)

MLKIKILVIT  LILALCLEGC  TSKEAATALP  TALQPKGKMV  IGYYPSWATA  RGVPLSSAPT60
QKLTHINYAF  SNVSVSGECV  LGDPAADVDR  VYAANESVTG  SDDNNTSDFH  GNFNQLLELK120
KQNPQLKVLI  SVGGWNWSGN  FSNAAKDETS  RQRFASSCID  LYLKQYAGVF  DGIDIDWEYP180
VSGGLTNGSP  DDTANFTLLL  YELRLQLDAL  GETNGEHYLL  TIAAPVGPGS  IRNLDLPGIA240
VAVDWINLMT  YDFHGTWDAT  TNFNAPLFRT  VNDPADAALN  ADAAVQTYLI  EGVPAAKLVM300
GVPFYGRGWS  GVTDVDHGLY  QSATGAAPGT  HEAGSFEYND  IRNRYLPTWQ  YYWNQEANVP360
WLYDSASQTF  ISFDDARSLE  AKAGYVKDQE  LAGVMIWEIS  QGDQSLVDGI  YAGFENGGPA420
KPTLMPKELV  PRPFEANLHE  VNNINVDGQL  TDWSAAPDFV  LDQESQVVFT  AAANSWSGPE480
DLSANAWAGW  TAEGLYFAFQ  VTDDQHVQSA  ADNTLWHGDH  MEIQLDTQMD  EDYDNPGMND540
DDFQIGLSLG  DLAQVPSVGY  AWFNGAFTPG  EIQGLEMAYT  MTEAGYILEA  FIPLEALSGI600
TLAEGAVFGM  NISPSDSDTS  GGSQETMLST  SSIRTYADPR  TFGKITLVK649

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help