CAZyme3D

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Entry ID

Information for CAZyme ID: BAA06424.1

Basic Information

GenBank IDBAA06424.1
FamilyCBM35, GH27
Sequence Length641
UniProt IDQ44052(100,100)Download
Average pLDDT?92.84
CAZy50 ID46478
CAZy50 RepYes, BAA06424.1
Structure ClusterSC_CBM35_clus21, SC_GH27_clus40
EC Number(s)3.2.1.94
Substrates(s)starch

Taxonomy

Tax ID1665
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrococcaceae
GenusArthrobacter
SpeciesArthrobacter globiformis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MMNLSRRTLL  TTGSAATLAY  ALGMAGSAQA  ATAVTARPGV  PVTAAPPLRL  ASRNSVFTRS60
GAGPRYWNIY  GYSFPHNAPI  PENEWKANID  WLAGNFADFG  YDIACTDGWI  EGSSRTTGNG120
YITSYNDSWQ  HDWAYWANYL  AARKMKLGVY  YNPLWVHRAA  VEDASKTVLG  RPDVKIADLV180
VPGDFFARDI  GGNQLYWLDV  TKSGAKEYVQ  GYVRYFKDLG  VPYLRIDFLS  WYEDGRDANI240
GQVNAPHGRA  NYELALSWIN  EAAGEDMEVS  LVMPHMFQDG  SAELANGDLV  RINADADKGG300
WDRLSGMRQN  WQDAWPNWAN  PFCGFTGWSH  RNGRGQLILD  GDFMRASTFA  SDEERKTMMN360
LMVAAGSPLA  IADTYQQIGN  NAWVYTNKEV  LQLNADGLVG  KPLYRSATPF  SKDPGSRDTE420
RWAGQLPDGS  WGVALFNRSD  TETVTKTIDF  AKDLGLATGG  NVRDLWEHRN  LGMDSRATAA480
LAPHASAIFR  VTPPKMHGTT  RYPAAFAAWG  GGAGFNNNHP  GYDGNGFVDG  LQAGSGSADP540
LVTFAVQVPH  RAATPSGYRY  ANATDDNTTS  KTTTKKANPE  KADRSTVDGP  VHVSFPGLAT600
WDTWGVAAGT  ITLDAGLNLV  TIGRGATDKG  AINLNWIELD  M641

Predicted 3D structure by AlphaFold2 with pLDDT = 92.84 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MMNLSRRTLL  TTGSAATLAY  ALGMAGSAQA  ATAVTARPGV  PVTAAPPLRL  ASRNSVFTRS60
GAGPRYWNIY  GYSFPHNAPI  PENEWKANID  WLAGNFADFG  YDIACTDGWI  EGSSRTTGNG120
YITSYNDSWQ  HDWAYWANYL  AARKMKLGVY  YNPLWVHRAA  VEDASKTVLG  RPDVKIADLV180
VPGDFFARDI  GGNQLYWLDV  TKSGAKEYVQ  GYVRYFKDLG  VPYLRIDFLS  WYEDGRDANI240
GQVNAPHGRA  NYELALSWIN  EAAGEDMEVS  LVMPHMFQDG  SAELANGDLV  RINADADKGG300
WDRLSGMRQN  WQDAWPNWAN  PFCGFTGWSH  RNGRGQLILD  GDFMRASTFA  SDEERKTMMN360
LMVAAGSPLA  IADTYQQIGN  NAWVYTNKEV  LQLNADGLVG  KPLYRSATPF  SKDPGSRDTE420
RWAGQLPDGS  WGVALFNRSD  TETVTKTIDF  AKDLGLATGG  NVRDLWEHRN  LGMDSRATAA480
LAPHASAIFR  VTPPKMHGTT  RYPAAFAAWG  GGAGFNNNHP  GYDGNGFVDG  LQAGSGSADP540
LVTFAVQVPH  RAATPSGYRY  ANATDDNTTS  KTTTKKANPE  KADRSTVDGP  VHVSFPGLAT600
WDTWGVAAGT  ITLDAGLNLV  TIGRGATDKG  AINLNWIELD  M641

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH27(213-472)+CBM35(502-639)

MMNLSRRTLL  TTGSAATLAY  ALGMAGSAQA  ATAVTARPGV  PVTAAPPLRL  ASRNSVFTRS60
GAGPRYWNIY  GYSFPHNAPI  PENEWKANID  WLAGNFADFG  YDIACTDGWI  EGSSRTTGNG120
YITSYNDSWQ  HDWAYWANYL  AARKMKLGVY  YNPLWVHRAA  VEDASKTVLG  RPDVKIADLV180
VPGDFFARDI  GGNQLYWLDV  TKSGAKEYVQ  GYVRYFKDLG  VPYLRIDFLS  WYEDGRDANI240
GQVNAPHGRA  NYELALSWIN  EAAGEDMEVS  LVMPHMFQDG  SAELANGDLV  RINADADKGG300
WDRLSGMRQN  WQDAWPNWAN  PFCGFTGWSH  RNGRGQLILD  GDFMRASTFA  SDEERKTMMN360
LMVAAGSPLA  IADTYQQIGN  NAWVYTNKEV  LQLNADGLVG  KPLYRSATPF  SKDPGSRDTE420
RWAGQLPDGS  WGVALFNRSD  TETVTKTIDF  AKDLGLATGG  NVRDLWEHRN  LGMDSRATAA480
LAPHASAIFR  VTPPKMHGTT  RYPAAFAAWG  GGAGFNNNHP  GYDGNGFVDG  LQAGSGSADP540
LVTFAVQVPH  RAATPSGYRY  ANATDDNTTS  KTTTKKANPE  KADRSTVDGP  VHVSFPGLAT600
WDTWGVAAGT  ITLDAGLNLV  TIGRGATDKG  AINLNWIELD  M641

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help