CAZyme3D

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Entry ID

Information for CAZyme ID: AZQ65062.1

Basic Information

GenBank IDAZQ65062.1
FamilyGH50
Sequence Length701
UniProt IDA0A3S9PAG1(100,100)Download
Average pLDDT?91.69
CAZy50 ID38529
CAZy50 RepYes, AZQ65062.1
Structure ClusterSC_GH50_clus18
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2494373
KingdomBacteria
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyFlammeovirgaceae
GenusFlammeovirga
SpeciesFlammeovirga pectinis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKNCYFTLLL  LFTALVSNAQ  ADQIFDLYDF  TKRADAKQIT  ISGDATSEIK  SSGYQITTAK60
DGSSVMKVTG  DWDLHEWLYI  AIILENKTEE  IVRFEPIIKG  ELTSDFKAPL  PLKNIGWLNP120
GETRVFDCIL  QPDVSTRTTT  YADMNANFPE  MQGMPAGVSF  TNSFDLAHTK  SIEIYFPVAD180
FERVVTVKAI  ELYKHAFPEN  FEKNHMTFFP  FIDEYGQYKY  DTWNGKIKND  KQLEEDIKTE240
DEDLAKHKGS  EEWTKYGGYK  LGPKLKVTGH  FYTTKVQDKW  WLVDPEGFLF  WSNGVNGAAD300
LSVNSQTSDK  DLYFEYLPMH  TDSTFGEFWD  GSNYNFGHAN  IKRKYGEYNP  QKYANRSMDR360
MKSWGLNTMG  AWSYDEAYNL  LEDKKTPYTV  AVISEAPELV  AGFPDIYNHH  WEKNLHKEIK420
HRSHKIKKDP  FFIGWFVDDE  LKWHTPEKLV  TLILQNDSHS  HGKKHYLQHL  QKAGEDVISF480
NKVTGKSFNS  WKEVMSSREE  LNLSGYSELN  NKFYAITAHK  YFKTVKKYIT  ELAPESLYLG540
CRWNVQSEHR  HNLNVSIGAK  YIDILSFNQF  DDEIYPNTFP  TLAGIDKPYI  ISEFNFGSLD600
SGKFSPGLSA  SSDQRNRGEK  YKNYVESAMR  DNNCVGAHWF  MWGNAATTGT  SKLGENANCG660
ILTETDQPYY  KLIDYMRDVN  YSMYQYRYSN  KEQNKTKQEL  K701

Predicted 3D structure by AlphaFold2 with pLDDT = 91.69 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKNCYFTLLL  LFTALVSNAQ  ADQIFDLYDF  TKRADAKQIT  ISGDATSEIK  SSGYQITTAK60
DGSSVMKVTG  DWDLHEWLYI  AIILENKTEE  IVRFEPIIKG  ELTSDFKAPL  PLKNIGWLNP120
GETRVFDCIL  QPDVSTRTTT  YADMNANFPE  MQGMPAGVSF  TNSFDLAHTK  SIEIYFPVAD180
FERVVTVKAI  ELYKHAFPEN  FEKNHMTFFP  FIDEYGQYKY  DTWNGKIKND  KQLEEDIKTE240
DEDLAKHKGS  EEWTKYGGYK  LGPKLKVTGH  FYTTKVQDKW  WLVDPEGFLF  WSNGVNGAAD300
LSVNSQTSDK  DLYFEYLPMH  TDSTFGEFWD  GSNYNFGHAN  IKRKYGEYNP  QKYANRSMDR360
MKSWGLNTMG  AWSYDEAYNL  LEDKKTPYTV  AVISEAPELV  AGFPDIYNHH  WEKNLHKEIK420
HRSHKIKKDP  FFIGWFVDDE  LKWHTPEKLV  TLILQNDSHS  HGKKHYLQHL  QKAGEDVISF480
NKVTGKSFNS  WKEVMSSREE  LNLSGYSELN  NKFYAITAHK  YFKTVKKYIT  ELAPESLYLG540
CRWNVQSEHR  HNLNVSIGAK  YIDILSFNQF  DDEIYPNTFP  TLAGIDKPYI  ISEFNFGSLD600
SGKFSPGLSA  SSDQRNRGEK  YKNYVESAMR  DNNCVGAHWF  MWGNAATTGT  SKLGENANCG660
ILTETDQPYY  KLIDYMRDVN  YSMYQYRYSN  KEQNKTKQEL  K701

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH50(62-684)

MKNCYFTLLL  LFTALVSNAQ  ADQIFDLYDF  TKRADAKQIT  ISGDATSEIK  SSGYQITTAK60
DGSSVMKVTG  DWDLHEWLYI  AIILENKTEE  IVRFEPIIKG  ELTSDFKAPL  PLKNIGWLNP120
GETRVFDCIL  QPDVSTRTTT  YADMNANFPE  MQGMPAGVSF  TNSFDLAHTK  SIEIYFPVAD180
FERVVTVKAI  ELYKHAFPEN  FEKNHMTFFP  FIDEYGQYKY  DTWNGKIKND  KQLEEDIKTE240
DEDLAKHKGS  EEWTKYGGYK  LGPKLKVTGH  FYTTKVQDKW  WLVDPEGFLF  WSNGVNGAAD300
LSVNSQTSDK  DLYFEYLPMH  TDSTFGEFWD  GSNYNFGHAN  IKRKYGEYNP  QKYANRSMDR360
MKSWGLNTMG  AWSYDEAYNL  LEDKKTPYTV  AVISEAPELV  AGFPDIYNHH  WEKNLHKEIK420
HRSHKIKKDP  FFIGWFVDDE  LKWHTPEKLV  TLILQNDSHS  HGKKHYLQHL  QKAGEDVISF480
NKVTGKSFNS  WKEVMSSREE  LNLSGYSELN  NKFYAITAHK  YFKTVKKYIT  ELAPESLYLG540
CRWNVQSEHR  HNLNVSIGAK  YIDILSFNQF  DDEIYPNTFP  TLAGIDKPYI  ISEFNFGSLD600
SGKFSPGLSA  SSDQRNRGEK  YKNYVESAMR  DNNCVGAHWF  MWGNAATTGT  SKLGENANCG660
ILTETDQPYY  KLIDYMRDVN  YSMYQYRYSN  KEQNKTKQEL  K701

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help