CAZyme3D

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Entry ID

Information for CAZyme ID: AZQ63954.1

Basic Information

GenBank IDAZQ63954.1
FamilyGH150
Sequence Length988
UniProt IDA0A3Q9FQB9(100,100)Download
Average pLDDT?89.36
CAZy50 ID14886
CAZy50 RepYes, AZQ63954.1
Structure ClusterSC_GH150_clus1
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2494373
KingdomBacteria
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyFlammeovirgaceae
GenusFlammeovirga
SpeciesFlammeovirga pectinis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MILNFTTITQ  NIVQHRCSQL  LKIIAIICLI  QIDVRAQEEG  FSYDFNKNES  LDWSADNTNF60
WAIEKDPTNT  KDAMHLKVIS  NPKLKHIYSI  ETGKTILNVS  TAVRDETTYI  VASDYDGLLM120
GVDYDGNILW  KNELSGYTNH  DIWCEDITKD  GSDEILAANA  DGTLYCLDKN  GELLWSYKHT180
EAPLFSVTVA  HHEGNAYVVT  GGFEMSILYI  NKEGILEKEV  KNTSYSMDKA  WGKDVIPTGK240
KHINNFLKKF  YDEEGNEKLL  VQGAHNGNAG  DGTLYFFNPF  EDTPYEIVSA  DLRKPVGGLN300
VVKVDGKVKV  LLGTSTAVTD  SQFEVYDLKE  KTRDYVFFPD  MQKEYDRFGY  RIVEPEVIEF360
DGKTHYLTLF  GSRIFLFSTT  FSADGERTII  RNKYAYNDLF  KDTKNNRLLL  ASAQSGGSCI420
HVIDINNKEW  IEEFPALDPP  GNIAKILENS  TKVREQVASF  QRPNRERVPL  EVYFVSDEKD480
EYTGPIIEQM  NSNTYGAQFY  ANKHMPKVEN  WDRSEMENET  YKNKRDARKN  YTLSQEEVLT540
TLTPLYEEGI  GLNTWGGHGN  DPYFYSVATK  KKIIDAANGK  RINFIYPELE  STSSEFEFVM600
NDLLYPLAEY  GKDKNLTISI  RTKHLFWSSV  IYKPFWSRVL  NGEFSDVFVP  SMEETTDKTM660
EISIAARMGV  WSSGALNNWG  VRSARDNPSY  IRLRQRSHQM  LPNHFLRQMI  YNISSGARYI720
NNFAVDQQYT  SVLWEMVEKG  VIYVPKREEI  VSISPVHLSI  VNPTDRFIHD  GNRVKWLTWF780
DEGRKDETNM  LFDRLNGSWP  ASPTNEWDFS  RIAANVKDRR  LNFLPNYPNG  IVLITPPQNK840
YFVPEELPRG  NLVDHLHPLY  KDILSEFISD  GDQFYSADGN  SSFSAPSYSA  TFKEEIEEKA900
KLLPLNVKGD  VAWVAAQSDA  KHLRVTLIDG  GYLNPSAKTA  KLTFHTVNPV  KITDILSGKS960
IPFSSGEVEV  EIPCGGFLFL  DVELQTAL988

Predicted 3D structure by AlphaFold2 with pLDDT = 89.36 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MILNFTTITQ  NIVQHRCSQL  LKIIAIICLI  QIDVRAQEEG  FSYDFNKNES  LDWSADNTNF60
WAIEKDPTNT  KDAMHLKVIS  NPKLKHIYSI  ETGKTILNVS  TAVRDETTYI  VASDYDGLLM120
GVDYDGNILW  KNELSGYTNH  DIWCEDITKD  GSDEILAANA  DGTLYCLDKN  GELLWSYKHT180
EAPLFSVTVA  HHEGNAYVVT  GGFEMSILYI  NKEGILEKEV  KNTSYSMDKA  WGKDVIPTGK240
KHINNFLKKF  YDEEGNEKLL  VQGAHNGNAG  DGTLYFFNPF  EDTPYEIVSA  DLRKPVGGLN300
VVKVDGKVKV  LLGTSTAVTD  SQFEVYDLKE  KTRDYVFFPD  MQKEYDRFGY  RIVEPEVIEF360
DGKTHYLTLF  GSRIFLFSTT  FSADGERTII  RNKYAYNDLF  KDTKNNRLLL  ASAQSGGSCI420
HVIDINNKEW  IEEFPALDPP  GNIAKILENS  TKVREQVASF  QRPNRERVPL  EVYFVSDEKD480
EYTGPIIEQM  NSNTYGAQFY  ANKHMPKVEN  WDRSEMENET  YKNKRDARKN  YTLSQEEVLT540
TLTPLYEEGI  GLNTWGGHGN  DPYFYSVATK  KKIIDAANGK  RINFIYPELE  STSSEFEFVM600
NDLLYPLAEY  GKDKNLTISI  RTKHLFWSSV  IYKPFWSRVL  NGEFSDVFVP  SMEETTDKTM660
EISIAARMGV  WSSGALNNWG  VRSARDNPSY  IRLRQRSHQM  LPNHFLRQMI  YNISSGARYI720
NNFAVDQQYT  SVLWEMVEKG  VIYVPKREEI  VSISPVHLSI  VNPTDRFIHD  GNRVKWLTWF780
DEGRKDETNM  LFDRLNGSWP  ASPTNEWDFS  RIAANVKDRR  LNFLPNYPNG  IVLITPPQNK840
YFVPEELPRG  NLVDHLHPLY  KDILSEFISD  GDQFYSADGN  SSFSAPSYSA  TFKEEIEEKA900
KLLPLNVKGD  VAWVAAQSDA  KHLRVTLIDG  GYLNPSAKTA  KLTFHTVNPV  KITDILSGKS960
IPFSSGEVEV  EIPCGGFLFL  DVELQTAL988

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH150(85-985)

MILNFTTITQ  NIVQHRCSQL  LKIIAIICLI  QIDVRAQEEG  FSYDFNKNES  LDWSADNTNF60
WAIEKDPTNT  KDAMHLKVIS  NPKLKHIYSI  ETGKTILNVS  TAVRDETTYI  VASDYDGLLM120
GVDYDGNILW  KNELSGYTNH  DIWCEDITKD  GSDEILAANA  DGTLYCLDKN  GELLWSYKHT180
EAPLFSVTVA  HHEGNAYVVT  GGFEMSILYI  NKEGILEKEV  KNTSYSMDKA  WGKDVIPTGK240
KHINNFLKKF  YDEEGNEKLL  VQGAHNGNAG  DGTLYFFNPF  EDTPYEIVSA  DLRKPVGGLN300
VVKVDGKVKV  LLGTSTAVTD  SQFEVYDLKE  KTRDYVFFPD  MQKEYDRFGY  RIVEPEVIEF360
DGKTHYLTLF  GSRIFLFSTT  FSADGERTII  RNKYAYNDLF  KDTKNNRLLL  ASAQSGGSCI420
HVIDINNKEW  IEEFPALDPP  GNIAKILENS  TKVREQVASF  QRPNRERVPL  EVYFVSDEKD480
EYTGPIIEQM  NSNTYGAQFY  ANKHMPKVEN  WDRSEMENET  YKNKRDARKN  YTLSQEEVLT540
TLTPLYEEGI  GLNTWGGHGN  DPYFYSVATK  KKIIDAANGK  RINFIYPELE  STSSEFEFVM600
NDLLYPLAEY  GKDKNLTISI  RTKHLFWSSV  IYKPFWSRVL  NGEFSDVFVP  SMEETTDKTM660
EISIAARMGV  WSSGALNNWG  VRSARDNPSY  IRLRQRSHQM  LPNHFLRQMI  YNISSGARYI720
NNFAVDQQYT  SVLWEMVEKG  VIYVPKREEI  VSISPVHLSI  VNPTDRFIHD  GNRVKWLTWF780
DEGRKDETNM  LFDRLNGSWP  ASPTNEWDFS  RIAANVKDRR  LNFLPNYPNG  IVLITPPQNK840
YFVPEELPRG  NLVDHLHPLY  KDILSEFISD  GDQFYSADGN  SSFSAPSYSA  TFKEEIEEKA900
KLLPLNVKGD  VAWVAAQSDA  KHLRVTLIDG  GYLNPSAKTA  KLTFHTVNPV  KITDILSGKS960
IPFSSGEVEV  EIPCGGFLFL  DVELQTAL988

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help