CAZyme3D

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Entry ID

Information for CAZyme ID: AZQ63948.1

Basic Information

GenBank IDAZQ63948.1
FamilyGH2
Sequence Length782
UniProt IDA0A3Q9FQV9(100,100)Download
Average pLDDT?92.22
CAZy50 ID16403
CAZy50 RepNo, AUS04893.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2494373
KingdomBacteria
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyFlammeovirgaceae
GenusFlammeovirga
SpeciesFlammeovirga pectinis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MQNHFKTLLL  LLFFSILSSG  QLMAAERDNF  NNNWKFIKEE  APLSFKIEEV  IANNFNDDNW60
EAVRLPHSTR  LEPLPVNNQW  QGISWYRKDF  EIPASATDKQ  LLIEFEAAMN  FTQIWINGRL120
VKEHQGGYLP  IVVDVTSLIK  LKGENTIVVR  LDNTDNEVTG  PKPLKRLDFN  MYGGLYRNAW180
LISKNKVHIT  HPILENKVAG  GGIFVTYPIA  TKEKAIVSVQ  THVSNLGNTS  QLHVVQEVLK240
GNKVIAKTKS  EKFTLLKDKS  HTLKQDLSIK  KPNLWSIDHP  NLYALVTKIY  KGKELVDEET300
TTIGIRRMEF  KGTSFYLNGK  ETFLRGVNRH  QEYPFIGYAL  SDNAQVRDAI  KIKKAGFDYV360
RLSHYPQSPA  FMDACDSLGL  VVLDAILGWQ  YYNPSDDFRN  QMFNASRDLI  RRDRNHACVM420
AWEVSLNETQ  MPLEFREKLS  AVAHEEYPGD  QCFTAGWMAD  GWDIYLQARQ  HRILHKNSGH480
VEKPYLVSEY  GDWEYYSNNA  GLNQDKMSKD  LRFKTSSRQL  RAFGEKRLLQ  QVTNVQEAHN540
DNLTTSAFAD  SYWVMYDYTR  GYHPDIESSG  LMDIFRLPKW  SYYFYQSQRS  PTKAHPAMVK600
IGSYWQKNSP  LNLRVFSNCD  EVKLYLNNTL  IGTQKPDKNT  ASTNLNHPPF  TFKMNAFKEG660
TLKAVGYING  KEITTDIVRT  PKQPKSVKIT  IDKSTVALAS  NVNDVVFVYF  SIEDENGTLV720
ADYDQKINIK  LNGDIELMNV  GEVKAEAGIG  TALIRINSLE  KGFSIEANTA  DSLHGSYEFG780
AL782

Predicted 3D structure by AlphaFold2 with pLDDT = 92.22 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH2(23-620)

MQNHFKTLLL  LLFFSILSSG  QLMAAERDNF  NNNWKFIKEE  APLSFKIEEV  IANNFNDDNW60
EAVRLPHSTR  LEPLPVNNQW  QGISWYRKDF  EIPASATDKQ  LLIEFEAAMN  FTQIWINGRL120
VKEHQGGYLP  IVVDVTSLIK  LKGENTIVVR  LDNTDNEVTG  PKPLKRLDFN  MYGGLYRNAW180
LISKNKVHIT  HPILENKVAG  GGIFVTYPIA  TKEKAIVSVQ  THVSNLGNTS  QLHVVQEVLK240
GNKVIAKTKS  EKFTLLKDKS  HTLKQDLSIK  KPNLWSIDHP  NLYALVTKIY  KGKELVDEET300
TTIGIRRMEF  KGTSFYLNGK  ETFLRGVNRH  QEYPFIGYAL  SDNAQVRDAI  KIKKAGFDYV360
RLSHYPQSPA  FMDACDSLGL  VVLDAILGWQ  YYNPSDDFRN  QMFNASRDLI  RRDRNHACVM420
AWEVSLNETQ  MPLEFREKLS  AVAHEEYPGD  QCFTAGWMAD  GWDIYLQARQ  HRILHKNSGH480
VEKPYLVSEY  GDWEYYSNNA  GLNQDKMSKD  LRFKTSSRQL  RAFGEKRLLQ  QVTNVQEAHN540
DNLTTSAFAD  SYWVMYDYTR  GYHPDIESSG  LMDIFRLPKW  SYYFYQSQRS  PTKAHPAMVK600
IGSYWQKNSP  LNLRVFSNCD  EVKLYLNNTL  IGTQKPDKNT  ASTNLNHPPF  TFKMNAFKEG660
TLKAVGYING  KEITTDIVRT  PKQPKSVKIT  IDKSTVALAS  NVNDVVFVYF  SIEDENGTLV720
ADYDQKINIK  LNGDIELMNV  GEVKAEAGIG  TALIRINSLE  KGFSIEANTA  DSLHGSYEFG780
AL782

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help