CAZyme3D

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Entry ID

Information for CAZyme ID: AUS04893.1

Basic Information

GenBank IDAUS04893.1
FamilyCE4, GH2
Sequence Length955
UniProt IDA0A2I7SG65(100,100)Download
Average pLDDT?89.56
CAZy50 ID16403
CAZy50 RepYes, AUS04893.1
Structure ClusterSC_CE4_clus155, SC_GH2_clus79
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2069432
KingdomBacteria
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusTamlana
SpeciesTamlana carrageenivorans

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKYFKYSWYA  CVLLLVFSCN  ETESNFVEEQ  NFNEDWFFNR  LEASEILTDF  AQPDTDFQHW60
ESVQLPHTPK  IEPEVVNNQW  QGICWYRKSF  VLDDNMQSKK  LYLKFEGAMN  IAKVWVNGEK120
LLTHQGGYLP  FVVDFTTVAK  FKANNTVAVK  LDNRDNPVTG  PKPLKILDFN  TYGGLYRNVW180
LIAKNPLHIT  DPILENKKAS  GGVFVTFPQV  SKEKATVQVQ  THVKNEGLSV  KTFQVRNTLL240
RDGDEVVSVE  SNTQTLELGN  DLEVQANLIV  KNPKLWSPSA  PNLYHLKTEV  FVNGQVVDQE300
VHRIGIKTMK  FIGQDFYLNG  EKTFLRGVNR  HQEYPYIGYA  LSENANYRDA  KKIKEAGFDY360
VRLSHYPQNK  AFMDACDELG  LATIDAILGW  QYFSEDAAFQ  NHVFQTARDL  IRRDRNRASV420
IAWEVSLNES  WMPEPFIDEL  HKIAHEEYPG  DQCFSAGWQS  YGCDIYLQAR  QHRLEHYDET480
VKKPYNVSEY  GDWEYYAMNA  GLDQSSWSDL  LQEERSSRQL  RDAGEAALLQ  QATNIQEAHN540
DNLNTPAFAD  GYWVMFDYNR  GYADDVEASG  IMDIFRIPKP  SYYFYQSQRS  ANEPFGKPVI600
HIANQWTPES  SLDVRIFSNC  DTVELFLNGK  SLGRQTPDQN  RTTTNLKHPP  FTFRLKAFET660
GKLEAKGYMD  DKVLVTHTRR  TPQEAAKIEV  VIDDGDLDVE  ANDIFLVHAQ  VTDIHGTVIP720
DFSEAVTFQV  AGDAELIGEN  PVKCVAGIAS  ILLKTSVSLD  DIKVSAKTSS  PLLSMTNKGV780
NTKKNDEMNN  VGISDFFWQG  INIESQLDVV  KLVKEQGHQI  ENHSWNHENG  SAFSNVDLWV840
NQVQKTFDEF  ETKASCTATY  YRPPFGAITQ  DQINFLAEKG  IKTVLWSFST  DDWDVTKNSK900
DNLLEMFKNQ  LHNGAIVLLH  DADYGRLEDK  LVAIEQMIIY  GKSKGFEFVS  LKDVI955

Predicted 3D structure by AlphaFold2 with pLDDT = 89.56 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKYFKYSWYA  CVLLLVFSCN  ETESNFVEEQ  NFNEDWFFNR  LEASEILTDF  AQPDTDFQHW60
ESVQLPHTPK  IEPEVVNNQW  QGICWYRKSF  VLDDNMQSKK  LYLKFEGAMN  IAKVWVNGEK120
LLTHQGGYLP  FVVDFTTVAK  FKANNTVAVK  LDNRDNPVTG  PKPLKILDFN  TYGGLYRNVW180
LIAKNPLHIT  DPILENKKAS  GGVFVTFPQV  SKEKATVQVQ  THVKNEGLSV  KTFQVRNTLL240
RDGDEVVSVE  SNTQTLELGN  DLEVQANLIV  KNPKLWSPSA  PNLYHLKTEV  FVNGQVVDQE300
VHRIGIKTMK  FIGQDFYLNG  EKTFLRGVNR  HQEYPYIGYA  LSENANYRDA  KKIKEAGFDY360
VRLSHYPQNK  AFMDACDELG  LATIDAILGW  QYFSEDAAFQ  NHVFQTARDL  IRRDRNRASV420
IAWEVSLNES  WMPEPFIDEL  HKIAHEEYPG  DQCFSAGWQS  YGCDIYLQAR  QHRLEHYDET480
VKKPYNVSEY  GDWEYYAMNA  GLDQSSWSDL  LQEERSSRQL  RDAGEAALLQ  QATNIQEAHN540
DNLNTPAFAD  GYWVMFDYNR  GYADDVEASG  IMDIFRIPKP  SYYFYQSQRS  ANEPFGKPVI600
HIANQWTPES  SLDVRIFSNC  DTVELFLNGK  SLGRQTPDQN  RTTTNLKHPP  FTFRLKAFET660
GKLEAKGYMD  DKVLVTHTRR  TPQEAAKIEV  VIDDGDLDVE  ANDIFLVHAQ  VTDIHGTVIP720
DFSEAVTFQV  AGDAELIGEN  PVKCVAGIAS  ILLKTSVSLD  DIKVSAKTSS  PLLSMTNKGV780
NTKKNDEMNN  VGISDFFWQG  INIESQLDVV  KLVKEQGHQI  ENHSWNHENG  SAFSNVDLWV840
NQVQKTFDEF  ETKASCTATY  YRPPFGAITQ  DQINFLAEKG  IKTVLWSFST  DDWDVTKNSK900
DNLLEMFKNQ  LHNGAIVLLH  DADYGRLEDK  LVAIEQMIIY  GKSKGFEFVS  LKDVI955

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH2(27-588)+CE4(796-884)

MKYFKYSWYA  CVLLLVFSCN  ETESNFVEEQ  NFNEDWFFNR  LEASEILTDF  AQPDTDFQHW60
ESVQLPHTPK  IEPEVVNNQW  QGICWYRKSF  VLDDNMQSKK  LYLKFEGAMN  IAKVWVNGEK120
LLTHQGGYLP  FVVDFTTVAK  FKANNTVAVK  LDNRDNPVTG  PKPLKILDFN  TYGGLYRNVW180
LIAKNPLHIT  DPILENKKAS  GGVFVTFPQV  SKEKATVQVQ  THVKNEGLSV  KTFQVRNTLL240
RDGDEVVSVE  SNTQTLELGN  DLEVQANLIV  KNPKLWSPSA  PNLYHLKTEV  FVNGQVVDQE300
VHRIGIKTMK  FIGQDFYLNG  EKTFLRGVNR  HQEYPYIGYA  LSENANYRDA  KKIKEAGFDY360
VRLSHYPQNK  AFMDACDELG  LATIDAILGW  QYFSEDAAFQ  NHVFQTARDL  IRRDRNRASV420
IAWEVSLNES  WMPEPFIDEL  HKIAHEEYPG  DQCFSAGWQS  YGCDIYLQAR  QHRLEHYDET480
VKKPYNVSEY  GDWEYYAMNA  GLDQSSWSDL  LQEERSSRQL  RDAGEAALLQ  QATNIQEAHN540
DNLNTPAFAD  GYWVMFDYNR  GYADDVEASG  IMDIFRIPKP  SYYFYQSQRS  ANEPFGKPVI600
HIANQWTPES  SLDVRIFSNC  DTVELFLNGK  SLGRQTPDQN  RTTTNLKHPP  FTFRLKAFET660
GKLEAKGYMD  DKVLVTHTRR  TPQEAAKIEV  VIDDGDLDVE  ANDIFLVHAQ  VTDIHGTVIP720
DFSEAVTFQV  AGDAELIGEN  PVKCVAGIAS  ILLKTSVSLD  DIKVSAKTSS  PLLSMTNKGV780
NTKKNDEMNN  VGISDFFWQG  INIESQLDVV  KLVKEQGHQI  ENHSWNHENG  SAFSNVDLWV840
NQVQKTFDEF  ETKASCTATY  YRPPFGAITQ  DQINFLAEKG  IKTVLWSFST  DDWDVTKNSK900
DNLLEMFKNQ  LHNGAIVLLH  DADYGRLEDK  LVAIEQMIIY  GKSKGFEFVS  LKDVI955

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help