CAZyme3D

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Entry ID

Information for CAZyme ID: AZQ61412.1

Basic Information

GenBank IDAZQ61412.1
FamilyCE2
Sequence Length602
UniProt IDA0A3Q9FM61(100,100)Download
Average pLDDT?85.83
CAZy50 ID52094
CAZy50 RepYes, AZQ61412.1
Structure ClusterSC_CE2_clus8
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2494373
KingdomBacteria
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyFlammeovirgaceae
GenusFlammeovirga
SpeciesFlammeovirga pectinis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNTITNFLIG  VVLFALQSTA  FAQTVNVTPS  NTKIQYSGRM  TMKNPDAPVF  SLPSTSIKIN60
FNGTSVKGTF  SNTLGNSFLY  IIVDGNADPY  NREVIKITAK  NQVFTLVENL  DAGDHTLEIV120
KVNEYDTKVT  FKGFVIKNGT  GLLPPSARPA  LKIEYYGDSN  AAGWSAWDVR  DEGYARLSGG180
YYTYPAMTAR  MLNAEVSNFS  AGGHGVTDAA  RKLDLKDHYS  KIHITGGNSN  VNQWDFENNY240
WGFTADVVVI  NLGANDYYSG  ASETVMKSSW  NELVTTLRTH  YPAAHIVMAN  SKGWAFGEPA300
DYVGDFVAER  IANGDTNMSF  VKFPWYWSDY  HTVINEHAGF  ANILAAHIAN  VMNLPTPTPS360
NLSTFAPYGE  VGNGSFESSL  IEGFADGWRP  FATWSFPEYA  KNRTDAVDGT  CYLVCPPTFG420
VMHAAPANPG  DMFDLSVYAR  AQSGTRGRLK  YEFRNQGQAV  IEEGSIDILD  LNSDWKQISL480
TTIAAPEGTW  HINVILEALN  NSTINFDLAE  MQLVTSNGRN  SLLKKDLNQK  LKYTVYPNPS540
VDRIQFEIEG  LKNEVPNYTI  FNVQGVQQMK  GKGTEIEIVT  LPKGVYFIQV  EGYSTVLTFI600
KK602

Predicted 3D structure by AlphaFold2 with pLDDT = 85.83 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MNTITNFLIG  VVLFALQSTA  FAQTVNVTPS  NTKIQYSGRM  TMKNPDAPVF  SLPSTSIKIN60
FNGTSVKGTF  SNTLGNSFLY  IIVDGNADPY  NREVIKITAK  NQVFTLVENL  DAGDHTLEIV120
KVNEYDTKVT  FKGFVIKNGT  GLLPPSARPA  LKIEYYGDSN  AAGWSAWDVR  DEGYARLSGG180
YYTYPAMTAR  MLNAEVSNFS  AGGHGVTDAA  RKLDLKDHYS  KIHITGGNSN  VNQWDFENNY240
WGFTADVVVI  NLGANDYYSG  ASETVMKSSW  NELVTTLRTH  YPAAHIVMAN  SKGWAFGEPA300
DYVGDFVAER  IANGDTNMSF  VKFPWYWSDY  HTVINEHAGF  ANILAAHIAN  VMNLPTPTPS360
NLSTFAPYGE  VGNGSFESSL  IEGFADGWRP  FATWSFPEYA  KNRTDAVDGT  CYLVCPPTFG420
VMHAAPANPG  DMFDLSVYAR  AQSGTRGRLK  YEFRNQGQAV  IEEGSIDILD  LNSDWKQISL480
TTIAAPEGTW  HINVILEALN  NSTINFDLAE  MQLVTSNGRN  SLLKKDLNQK  LKYTVYPNPS540
VDRIQFEIEG  LKNEVPNYTI  FNVQGVQQMK  GKGTEIEIVT  LPKGVYFIQV  EGYSTVLTFI600
KK602

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CE2(152-348)

MNTITNFLIG  VVLFALQSTA  FAQTVNVTPS  NTKIQYSGRM  TMKNPDAPVF  SLPSTSIKIN60
FNGTSVKGTF  SNTLGNSFLY  IIVDGNADPY  NREVIKITAK  NQVFTLVENL  DAGDHTLEIV120
KVNEYDTKVT  FKGFVIKNGT  GLLPPSARPA  LKIEYYGDSN  AAGWSAWDVR  DEGYARLSGG180
YYTYPAMTAR  MLNAEVSNFS  AGGHGVTDAA  RKLDLKDHYS  KIHITGGNSN  VNQWDFENNY240
WGFTADVVVI  NLGANDYYSG  ASETVMKSSW  NELVTTLRTH  YPAAHIVMAN  SKGWAFGEPA300
DYVGDFVAER  IANGDTNMSF  VKFPWYWSDY  HTVINEHAGF  ANILAAHIAN  VMNLPTPTPS360
NLSTFAPYGE  VGNGSFESSL  IEGFADGWRP  FATWSFPEYA  KNRTDAVDGT  CYLVCPPTFG420
VMHAAPANPG  DMFDLSVYAR  AQSGTRGRLK  YEFRNQGQAV  IEEGSIDILD  LNSDWKQISL480
TTIAAPEGTW  HINVILEALN  NSTINFDLAE  MQLVTSNGRN  SLLKKDLNQK  LKYTVYPNPS540
VDRIQFEIEG  LKNEVPNYTI  FNVQGVQQMK  GKGTEIEIVT  LPKGVYFIQV  EGYSTVLTFI600
KK602

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help