CAZyme3D

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Entry ID

Information for CAZyme ID: AZB71357.1

Basic Information

GenBank IDAZB71357.1
FamilyGT47
Sequence Length788
UniProt IDA0A3G6WWM9(100,100)Download
Average pLDDT?78.28
CAZy50 ID28566
CAZy50 RepYes, AZB71357.1
Structure ClusterSC_GT47_clus12
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2219813
KingdomBacteria
PhylumCyanobacteriota
ClassCyanophyceae
OrderSynechococcales
FamilySynechococcaceae
GenusSynechococcus
SpeciesSynechococcus elongatus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MATFYLAEAE  NWSFRTVWHD  RFFTVLKYHP  ARAEDLGQAD  YIFLDADFAL  ETNWPYYGAQ60
TKAILKGDRF  PTDEEILEYL  FEHPVSGYGK  PLVLINMNPL  AKWPAIMQAL  PDVLVVSHCH120
TTENYRAGID  ISFPAMPLLD  RQCYPTRERS  TLLSFRGANS  HSVREQLQLL  HQPPEIEVEL180
IQQSYWGALN  YADAPQGLSA  EQQIYTELMA  RSRFSAAPRG  HDVFSYRLLE  VMAAGAVPVV240
LADDWVLPFS  ELLDWSKFSL  QVAEEQCLEL  PQKLQVISTE  QWQAMQQRSQ  QVYQQYFYSL300
AQQVNTLLLI  LDQRSGDDPT  PEVEIEAVLL  DRAQQYRLSE  DLVAAETCLA  TLPRSPACVL360
EQVRLVLTAQ  QPETALALLD  SVKVPEEERA  EYYNLLGVAQ  TQLGQWEAAI  ATYRQGLELF420
PLQPKLSTNL  CLALRHCDRL  PEALGISTAL  LTEQPENVDR  IQLQADTLNL  SAVYDEALVL480
YQQVLAQAPE  RANAQLAIAE  ILLRQGKADG  WEAYEARFAA  EPSLAVLAAY  YPQPRWQGEE540
LGSRSLLVWG  EQGYGDQIQF  SRYLWVLRDR  YPQARIQFQT  DAVLVPLFAE  PLASLGIEVI600
AAQVTEQVFD  FQVPLLSLPR  LVWPSLQEIP  YSAGWLPCPL  PPPQEEANRK  FRVGIVWQAG660
RRAGVQKSAT  ADRRSCSLAA  MLEAVQEVVQ  RPDLEVVSLQ  LGYEGVLPEG  VMDWSDRLVD720
FAATAQVLME  LDLLVTVDTA  IVHLAGAMKI  PTKVLLAYPT  DWRWQQDLGV  SWYSSVGSCH780
FVHLPTIS788

Predicted 3D structure by AlphaFold2 with pLDDT = 78.28 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MATFYLAEAE  NWSFRTVWHD  RFFTVLKYHP  ARAEDLGQAD  YIFLDADFAL  ETNWPYYGAQ60
TKAILKGDRF  PTDEEILEYL  FEHPVSGYGK  PLVLINMNPL  AKWPAIMQAL  PDVLVVSHCH120
TTENYRAGID  ISFPAMPLLD  RQCYPTRERS  TLLSFRGANS  HSVREQLQLL  HQPPEIEVEL180
IQQSYWGALN  YADAPQGLSA  EQQIYTELMA  RSRFSAAPRG  HDVFSYRLLE  VMAAGAVPVV240
LADDWVLPFS  ELLDWSKFSL  QVAEEQCLEL  PQKLQVISTE  QWQAMQQRSQ  QVYQQYFYSL300
AQQVNTLLLI  LDQRSGDDPT  PEVEIEAVLL  DRAQQYRLSE  DLVAAETCLA  TLPRSPACVL360
EQVRLVLTAQ  QPETALALLD  SVKVPEEERA  EYYNLLGVAQ  TQLGQWEAAI  ATYRQGLELF420
PLQPKLSTNL  CLALRHCDRL  PEALGISTAL  LTEQPENVDR  IQLQADTLNL  SAVYDEALVL480
YQQVLAQAPE  RANAQLAIAE  ILLRQGKADG  WEAYEARFAA  EPSLAVLAAY  YPQPRWQGEE540
LGSRSLLVWG  EQGYGDQIQF  SRYLWVLRDR  YPQARIQFQT  DAVLVPLFAE  PLASLGIEVI600
AAQVTEQVFD  FQVPLLSLPR  LVWPSLQEIP  YSAGWLPCPL  PPPQEEANRK  FRVGIVWQAG660
RRAGVQKSAT  ADRRSCSLAA  MLEAVQEVVQ  RPDLEVVSLQ  LGYEGVLPEG  VMDWSDRLVD720
FAATAQVLME  LDLLVTVDTA  IVHLAGAMKI  PTKVLLAYPT  DWRWQQDLGV  SWYSSVGSCH780
FVHLPTIS788

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT47(109-276)+GT9(633-764)

MATFYLAEAE  NWSFRTVWHD  RFFTVLKYHP  ARAEDLGQAD  YIFLDADFAL  ETNWPYYGAQ60
TKAILKGDRF  PTDEEILEYL  FEHPVSGYGK  PLVLINMNPL  AKWPAIMQAL  PDVLVVSHCH120
TTENYRAGID  ISFPAMPLLD  RQCYPTRERS  TLLSFRGANS  HSVREQLQLL  HQPPEIEVEL180
IQQSYWGALN  YADAPQGLSA  EQQIYTELMA  RSRFSAAPRG  HDVFSYRLLE  VMAAGAVPVV240
LADDWVLPFS  ELLDWSKFSL  QVAEEQCLEL  PQKLQVISTE  QWQAMQQRSQ  QVYQQYFYSL300
AQQVNTLLLI  LDQRSGDDPT  PEVEIEAVLL  DRAQQYRLSE  DLVAAETCLA  TLPRSPACVL360
EQVRLVLTAQ  QPETALALLD  SVKVPEEERA  EYYNLLGVAQ  TQLGQWEAAI  ATYRQGLELF420
PLQPKLSTNL  CLALRHCDRL  PEALGISTAL  LTEQPENVDR  IQLQADTLNL  SAVYDEALVL480
YQQVLAQAPE  RANAQLAIAE  ILLRQGKADG  WEAYEARFAA  EPSLAVLAAY  YPQPRWQGEE540
LGSRSLLVWG  EQGYGDQIQF  SRYLWVLRDR  YPQARIQFQT  DAVLVPLFAE  PLASLGIEVI600
AAQVTEQVFD  FQVPLLSLPR  LVWPSLQEIP  YSAGWLPCPL  PPPQEEANRK  FRVGIVWQAG660
RRAGVQKSAT  ADRRSCSLAA  MLEAVQEVVQ  RPDLEVVSLQ  LGYEGVLPEG  VMDWSDRLVD720
FAATAQVLME  LDLLVTVDTA  IVHLAGAMKI  PTKVLLAYPT  DWRWQQDLGV  SWYSSVGSCH780
FVHLPTIS788

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help