CAZyme3D

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Entry ID

Information for CAZyme ID: AYV69082.1

Basic Information

GenBank IDAYV69082.1
FamilyGT51
Sequence Length699
UniProt IDA0A268FB12(100,100)Download
Average pLDDT?87.27
CAZy50 ID27076
CAZy50 RepNo, UYZ23060.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1397
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyBacillaceae
GenusNiallia
SpeciesNiallia circulans

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MDRLKPYWEG  FRRFWKKRHL  TQIILLALLL  FVLLAILYFT  YLATQANVSS  LKAGLSQATI60
IYDKDGDEAT  RIRTERTEGI  ELKDVPKYVP  DAVVSIEDER  FYQHNGFDIK  GISRAFFKNI120
FAGRITGGGS  TITQQLTKNA  LLTSEQTYKR  KAEELFLAVE  IEKHYKKDEI  LQMYLNHVYF180
GSGAWGISQA  SLKYFNKDIK  DVSISEAALL  AGIVQAPSAL  DPYNNYDGAI  NRRNLVLKKM240
VELKKITEEQ  YQQAVNEKIV  LENGGGSFIE  RDYPYFVDAV  IDEAISKYGL  TQEEILKRGY300
KIYTEMDQNL  QSTLEKTFAR  DSLFPRSSDG  TLVQGGAVLL  DPETGGVRGL  VGGRGEQVFR360
GFNRATQIKV  QPGSTMKPLA  VYTPALEKGY  KIDSMLEDKP  FKKGDYEPKN  FTKSYKGEVP420
MYEALEDSLN  VPAVWLLDKI  GLENGLKSLD  RFGIPYEKED  EYLGIALGGM  YSGVSPLQMA480
SAYSTFPNEG  VRMESHLITK  IVGPTGNVVA  EYEPKSTRVT  SKSVTNDMTS  MLLDVIKSGT540
GQGAKITGFQ  LAGKTGSTQL  EDSSISGTKD  QWFVGYTPNL  VGSMWLGYDK  TDKMHYLPSK600
SSGDVIPIFK  TIMDQAVQYV  EPENFQVQSV  SDRLANKDNK  NVNKKVEKTK  KVIKEKAEEL660
ETTIKENSSK  WSKVVDEIKE  DAKKVNEKVK  GKLQEILGN699

Predicted 3D structure by AlphaFold2 with pLDDT = 87.27 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT51(66-241)

MDRLKPYWEG  FRRFWKKRHL  TQIILLALLL  FVLLAILYFT  YLATQANVSS  LKAGLSQATI60
IYDKDGDEAT  RIRTERTEGI  ELKDVPKYVP  DAVVSIEDER  FYQHNGFDIK  GISRAFFKNI120
FAGRITGGGS  TITQQLTKNA  LLTSEQTYKR  KAEELFLAVE  IEKHYKKDEI  LQMYLNHVYF180
GSGAWGISQA  SLKYFNKDIK  DVSISEAALL  AGIVQAPSAL  DPYNNYDGAI  NRRNLVLKKM240
VELKKITEEQ  YQQAVNEKIV  LENGGGSFIE  RDYPYFVDAV  IDEAISKYGL  TQEEILKRGY300
KIYTEMDQNL  QSTLEKTFAR  DSLFPRSSDG  TLVQGGAVLL  DPETGGVRGL  VGGRGEQVFR360
GFNRATQIKV  QPGSTMKPLA  VYTPALEKGY  KIDSMLEDKP  FKKGDYEPKN  FTKSYKGEVP420
MYEALEDSLN  VPAVWLLDKI  GLENGLKSLD  RFGIPYEKED  EYLGIALGGM  YSGVSPLQMA480
SAYSTFPNEG  VRMESHLITK  IVGPTGNVVA  EYEPKSTRVT  SKSVTNDMTS  MLLDVIKSGT540
GQGAKITGFQ  LAGKTGSTQL  EDSSISGTKD  QWFVGYTPNL  VGSMWLGYDK  TDKMHYLPSK600
SSGDVIPIFK  TIMDQAVQYV  EPENFQVQSV  SDRLANKDNK  NVNKKVEKTK  KVIKEKAEEL660
ETTIKENSSK  WSKVVDEIKE  DAKKVNEKVK  GKLQEILGN699

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help