Information for CAZyme ID: AYQ33232.1
Basic Information
| GenBank ID | AYQ33232.1 |
| Family | CE6 |
| Sequence Length | 789 |
| UniProt ID | A0A3G3GPL9(100,100) |
| Average pLDDT? | 92.49 |
| CAZy50 ID | 28494 |
| CAZy50 Rep | Yes, AYQ33232.1 |
| Structure Cluster | SC_CE6_clus10 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 2268026 |
| Kingdom | Bacteria |
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Spirosomataceae |
| Genus | Runella |
| Species | Runella sp. SP2 |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MKKFQSTLFL ALTLLLLGYS AHAQDPNFHI YLCIGQSNME GPARIEPQDT TVDNRLRLLA | 60 |
| AVDCPELGRT KGNWYTAKPP LCRCNTRLSP ADYFGRTLVA NLPQNVKVGF VHVAVAGSKI | 120 |
| EIFDKKDYKM YLDTSAKERP WMINMANQYG GNPYERLVEM ARLAQKAGVI KGILLHQGES | 180 |
| NTGDKGWPMK VKKIYDDLLT DLNLPANSLP LLAGELVNAD QGGKCASMNP IIATLPQVIP | 240 |
| QAIVVSSKGL PAVPDKLHFS SEGIRIFGKR YAAALLASQG KKIDIDESSI APPAPVKVEQ | 300 |
| GLLQGSTENG LSVYKGIPFA APPVDALRWK APQPAAKWEG VKQATQFAPA PYQGGNPPSG | 360 |
| KSEDCLYLNI WSPAKTANEN LPVMVWIYGG GFSFGATSEP VTNGEKLAKK GVILVSIAYR | 420 |
| VNQMGFLAHP ELSAETPQKT SGNYGLLDMI AGLQWVQKNI KAFGGNPDKV TIFGESAGGI | 480 |
| AVSMLCASPL AKGLFHGAIS QSGGSFGPDR LTTYPGENMK RLALAEKQGV EFMQKAGATS | 540 |
| LAELRALPAD KLPSGFGNPG GWPIVDGYVI PDDQHVLYQK GKFNHTPVLI GYNSDEGASF | 600 |
| MPPKTPKDYI ESTTKRYGPF AEKLIKAYPV DENSVPKTAR DLARDAAFGW QTWAWANLQS | 660 |
| QKSKDKVYYY YFDQHPEHPA GSAKFGYGSP HAQDVAFVFG NLNPADQNRT PTDGDMSETI | 720 |
| MTYWTNFAKN GNPNGGNVPQ WEAFSTKKPA VMYFQQKAFM GSVPSEDAMK VLDKYFEWRR | 780 |
| TPEGKEWAK | 789 |
Predicted 3D structure by AlphaFold2 with pLDDT = 92.49 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MKKFQSTLFL ALTLLLLGYS AHAQDPNFHI YLCIGQSNME GPARIEPQDT TVDNRLRLLA | 60 |
| AVDCPELGRT KGNWYTAKPP LCRCNTRLSP ADYFGRTLVA NLPQNVKVGF VHVAVAGSKI | 120 |
| EIFDKKDYKM YLDTSAKERP WMINMANQYG GNPYERLVEM ARLAQKAGVI KGILLHQGES | 180 |
| NTGDKGWPMK VKKIYDDLLT DLNLPANSLP LLAGELVNAD QGGKCASMNP IIATLPQVIP | 240 |
| QAIVVSSKGL PAVPDKLHFS SEGIRIFGKR YAAALLASQG KKIDIDESSI APPAPVKVEQ | 300 |
| GLLQGSTENG LSVYKGIPFA APPVDALRWK APQPAAKWEG VKQATQFAPA PYQGGNPPSG | 360 |
| KSEDCLYLNI WSPAKTANEN LPVMVWIYGG GFSFGATSEP VTNGEKLAKK GVILVSIAYR | 420 |
| VNQMGFLAHP ELSAETPQKT SGNYGLLDMI AGLQWVQKNI KAFGGNPDKV TIFGESAGGI | 480 |
| AVSMLCASPL AKGLFHGAIS QSGGSFGPDR LTTYPGENMK RLALAEKQGV EFMQKAGATS | 540 |
| LAELRALPAD KLPSGFGNPG GWPIVDGYVI PDDQHVLYQK GKFNHTPVLI GYNSDEGASF | 600 |
| MPPKTPKDYI ESTTKRYGPF AEKLIKAYPV DENSVPKTAR DLARDAAFGW QTWAWANLQS | 660 |
| QKSKDKVYYY YFDQHPEHPA GSAKFGYGSP HAQDVAFVFG NLNPADQNRT PTDGDMSETI | 720 |
| MTYWTNFAKN GNPNGGNVPQ WEAFSTKKPA VMYFQQKAFM GSVPSEDAMK VLDKYFEWRR | 780 |
| TPEGKEWAK | 789 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.